Basic Information:

  VIRBase ID:  

VHID00401772

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART10-5p:  MIMAT0004817          CCDC134:  NM_001304797     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART10-5p	CCDC134
miRBase Accession/Entrez ID	MIMAT0004817	79879
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	CCDC134	chr22:42220621(+) A-I      intronic chr22:42220613(+) A-I      intronic chr22:42220578(+) A-I      intronic chr22:42220608(+) A-I      intronic chr22:42220602(+) A-I      intronic chr22:42220577(+) A-I      intronic chr22:42211263(+) A-I      intronic chr22:42212775(+) A-I      intronic chr22:42220493(+) A-I      intronic chr22:42199585(+) A-I      intronic chr22:42203334(+) A-I      intronic chr22:42199609(+) A-I      intronic chr22:42199610(+) A-I      intronic chr22:42199611(+) A-I      intronic chr22:42210583(+) A-I      intronic chr22:42216182(+) A-I      intronic chr22:42216183(+) A-I      intronic chr22:42216204(+) A-I      intronic chr22:42216207(+) A-I      intronic chr22:42216397(+) A-I      intronic chr22:42216403(+) A-I      intronic chr22:42216443(+) A-I      intronic chr22:42219298(+) A-I      intronic chr22:42219386(+) A-I      intronic chr22:42219413(+) A-I      intronic chr22:42219465(+) A-I      intronic chr22:42212824(+) A-I      intronic chr22:42203333(+) A-I      intronic chr22:42203039(+) A-I      intronic chr22:42202931(+) A-I      intronic chr22:42202892(+) A-I      intronic chr22:42202891(+) A-I      intronic chr22:42202889(+) A-I      intronic chr22:42202486(+) A-I      intronic chr22:42203336(+) A-I      intronic chr22:42207512(+) A-I      intronic chr22:42208375(+) A-I      intronic chr22:42210383(+) A-I      intronic chr22:42210386(+) A-I      intronic chr22:42202431(+) A-I      intronic chr22:42210405(+) A-I      intronic chr22:42210450(+) A-I      intronic chr22:42202423(+) A-I      intronic chr22:42202357(+) A-I      intronic chr22:42202352(+) A-I      intronic chr22:42202348(+) A-I      intronic chr22:42202320(+) A-I      intronic chr22:42200986(+) A-I      intronic chr22:42210467(+) A-I      intronic chr22:42210512(+) A-I      intronic chr22:42210561(+) A-I      intronic chr22:42211327(+) A-I      intronic chr22:42211339(+) A-I      intronic chr22:42211346(+) A-I      intronic chr22:42211349(+) A-I      intronic chr22:42211391(+) A-I      intronic chr22:42211750(+) A-I      intronic chr22:42211752(+) A-I      intronic chr22:42211874(+) A-I      intronic chr22:42211876(+) A-I      intronic chr22:42212684(+) A-I      intronic chr22:42212766(+) A-I      intronic chr22:42216176(+) A-I      intronic chr22:42212771(+) A-I      intronic chr22:42213550(+) A-I      intronic chr22:42212879(+) A-I      intronic chr22:42212871(+) A-I      intronic chr22:42212867(+) A-I      intronic chr22:42212833(+) A-I      intronic chr22:42220582(+) A-I      intronic chr22:42220556(+) A-I      intronic chr22:42220516(+) A-I      intronic chr22:42204035(+) A-I      intronic chr22:42210410(+) A-I      intronic chr22:42208170(+) A-I      intronic chr22:42201743(+) A-I      intronic chr22:42207502(+) A-I      intronic chr22:42212746(+) A-I      intronic chr22:42206759(+) A-I      intronic chr22:42208149(+) A-I      intronic chr22:42202836(+) A-I      intronic chr22:42207533(+) A-I      intronic chr22:42202797(+) A-I      intronic chr22:42208197(+) A-I      intronic chr22:42203414(+) A-I      intronic chr22:42201867(+) A-I      intronic chr22:42212720(+) A-I      intronic chr22:42210428(+) A-I      intronic chr22:42207616(+) A-I      intronic chr22:42201342(+) A-I      intronic chr22:42200989(+) A-I      intronic chr22:42199974(+) A-I      intronic chr22:42202409(+) A-I      intronic chr22:42207550(+) A-I      intronic chr22:42201830(+) A-I      intronic chr22:42202796(+) A-I      intronic chr22:42207668(+) A-I      intronic chr22:42219477(+) A-I      intronic chr22:42202340(+) A-I      intronic chr22:42207697(+) A-I      intronic chr22:42212735(+) A-I      intronic chr22:42203410(+) A-I      intronic chr22:42210420(+) A-I      intronic chr22:42206681(+) A-I      intronic chr22:42207633(+) A-I      intronic chr22:42208544(+) A-I      intronic chr22:42210499(+) A-I      intronic chr22:42220551(+) A-I      intronic chr22:42201023(+) A-I      intronic chr22:42211916(+) A-I      intronic chr22:42202323(+) A-I      intronic chr22:42212811(+) A-I      intronic chr22:42210523(+) A-I      intronic chr22:42207562(+) A-I      intronic chr22:42208560(+) A-I      intronic chr22:42211416(+) A-I      intronic chr22:42202498(+) A-I      intronic chr22:42202349(+) A-I      intronic chr22:42200994(+) A-I      intronic chr22:42199972(+) A-I      intronic chr22:42207572(+) A-I      intronic chr22:42208266(+) A-I      intronic chr22:42216274(+) A-I      intronic chr22:42210451(+) A-I      intronic chr22:42220714(+) A-I      intronic chr22:42210464(+) A-I      intronic chr22:42207464(+) A-I      intronic chr22:42198657(+) A-I      intronic chr22:42208171(+) A-I      intronic chr22:42203388(+) A-I      intronic chr22:42216080(+) A-I      intronic chr22:42211718(+) A-I      intronic chr22:42208260(+) A-I      intronic chr22:42207598(+) A-I      intronic chr22:42208279(+) A-I      intronic chr22:42211893(+) A-I      intronic chr22:42207532(+) A-I      intronic chr22:42219510(+) A-I      intronic chr22:42208341(+) A-I      intronic chr22:42200089(+) A-I      intronic chr22:42208264(+) A-I      intronic chr22:42212872(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	CCDC134	chr22:42199504(+) G-T intron -    22484847 chr22:42199506(+) T-C intron -    22484847 chr22:42199974(+) A-G intron -    22484847 chr22:42200989(+) A-G intron -    22484847 chr22:42202836(+) A-G intron -    22484847 chr22:42204035(+) A-G intron -    22484847 chr22:42207464(+) A-G intron -    22484847 chr22:42207532(+) A-G intron -    22484847 chr22:42207533(+) A-G intron -    22484847 chr22:42207613(+) A-G intron -    22484847 chr22:42207633(+) A-G intron -    22484847 chr22:42208249(+) A-G intron -    22484847 chr22:42208547(+) A-G intron -    22484847 chr22:42208560(+) A-G intron -    22484847 chr22:42210499(+) A-G intron -    22484847 chr22:42210500(+) A-G intron -    22484847 chr22:42210523(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CCDC134	chr22:42209288-42209289(+) m6A CDS//intron       24284625 chr22:42209366-42209367(+) m6A CDS//intron       24284625 chr22:42209404-42209405(+) m6A CDS//intron       24284625 chr22:42209785-42209786(+) m6A CDS//intron       24284625//24981863 chr22:42209800-42209801(+) m6A CDS//intron       24284625//24981863 chr22:42221744-42221745(+) m1A CDS       26863196 chr22:42221880-42221881(+) m1A 3'UTR       26863196 chr22:42221988-42221989(+) m6A 3'UTR       24284625//25456834//24981863//22575960//22608085 chr22:42222079-42222080(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr22:42222112-42222113(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr22:42222131-42222132(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr22:42222175-42222176(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr22:42222269-42222270(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr22:42222288-42222289(+) m6A 3'UTR       24284625//25456834//22575960//22608085 chr22:42222297-42222298(+) m6A 3'UTR       24284625//25456834//22575960//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	CCDC134	Chromatin K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus K562 cells     - Ribosome HEK-293 cells     22199352

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART10-5p
Interactor2: CCDC134

Evidence Support:

Prediction-Evidence	miRanda//PITA//RNAHybrid//Targetscan
Support Database	VmiReg