Detail Information

Basic Information:


  VIRBase ID:  

VHID00401194

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART10-5p:           TESC:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART10-5p TESC
miRBase
Accession/Entrez ID		 MIMAT0004817 54997
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - CHP3//TSC

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR TESC
chr12:117513705(-) A-I      intronic
chr12:117513703(-) A-I      intronic
chr12:117513689(-) A-I      intronic
chr12:117513675(-) A-I      intronic
chr12:117504351(-) A-I      intronic
chr12:117481436(-) A-I      intronic
chr12:117504337(-) A-I      intronic
chr12:117482580(-) A-I      intronic
chr12:117513725(-) A-I      intronic
chr12:117513673(-) A-I      intronic
chr12:117504288(-) A-I      intronic
chr12:117513707(-) A-I      intronic
chr12:117513659(-) A-I      intronic
chr12:117513717(-) A-I      intronic
chr12:117513709(-) A-I      intronic
chr12:117504109(-) A-I      intronic
chr12:117482071(-) A-I      intronic
chr12:117505821(-) A-I      intronic
chr12:117512090(-) A-I      intronic
chr12:117504245(-) A-I      intronic
chr12:117521750(-) A-I      intronic
chr12:117516038(-) A-I      intronic
chr12:117505985(-) A-I      intronic
chr12:117533079(-) A-I      intronic
chr12:117481806(-) A-I      intronic
chr12:117521657(-) A-I      intronic
chr12:117506152(-) A-I      intronic
chr12:117485729(-) A-I      intronic
chr12:117487854(-) A-I      intronic
chr12:117487858(-) A-I      intronic
chr12:117503604(-) A-I      intronic
chr12:117504266(-) A-I      intronic
chr12:117479302(-) A-I      intronic
chr12:117481794(-) A-I      intronic
chr12:117481437(-) A-I      intronic
chr12:117521051(-) A-I      intronic
chr12:117525650(-) A-I      intronic
chr12:117505794(-) A-I      intronic
chr12:117482000(-) A-I      intronic
chr12:117506162(-) A-I      intronic
chr12:117532976(-) A-I      intronic
chr12:117533053(-) A-I      intronic
chr12:117507150(-) A-I      intronic
chr12:117504078(-) A-I      intronic
chr12:117506143(-) A-I      intronic
chr12:117495639(-) A-I      intronic
chr12:117482519(-) A-I      intronic
chr12:117504273(-) A-I      intronic
chr12:117517219(-) A-I      intronic
chr12:117503635(-) A-I      intronic
chr12:117506195(-) A-I      intronic
chr12:117482658(-) A-I      intronic
chr12:117505770(-) A-I      intronic
chr12:117481350(-) A-I      intronic
chr12:117507151(-) A-I      intronic
chr12:117520063(-) A-I      intronic
chr12:117533028(-) A-I      intronic
chr12:117504176(-) A-I      intronic
chr12:117521714(-) A-I      intronic
chr12:117524402(-) A-I      intronic
chr12:117494153(-) A-I      intronic
chr12:117482017(-) A-I      intronic
chr12:117482661(-) A-I      intronic
chr12:117481521(-) A-I      intronic
chr12:117520065(-) A-I      intronic
chr12:117481375(-) A-I      intronic
chr12:117504108(-) A-I      intronic
chr12:117481974(-) A-I      intronic
chr12:117504305(-) A-I      intronic
chr12:117493020(-) A-I      intronic
chr12:117521063(-) A-I      intronic
chr12:117513559(-) A-I      intronic
chr12:117520064(-) A-I      intronic
chr12:117482619(-) A-I      intronic
chr12:117481402(-) A-I      intronic
chr12:117521658(-) A-I      intronic
chr12:117524442(-) A-I      intronic
chr12:117513503(-) A-I      intronic
chr12:117482033(-) A-I      intronic
chr12:117481432(-) A-I      intronic
chr12:117521751(-) A-I      intronic
chr12:117503625(-) A-I      intronic
chr12:117533044(-) A-I      intronic
chr12:117504104(-) A-I      intronic
chr12:117507181(-) A-I      intronic
chr12:117513567(-) A-I      intronic
chr12:117482539(-) A-I      intronic
chr12:117513895(-) A-I      intronic
chr12:117481393(-) A-I      intronic
chr12:117496766(-) A-I      intronic
chr12:117504341(-) A-I      intronic
chr12:117505825(-) A-I      intronic
chr12:117479276(-) A-I      intronic
chr12:117503611(-) A-I      intronic
chr12:117485621(-) A-I      intronic
chr12:117479211(-) A-I      intronic
chr12:117481832(-) A-I      intronic
chr12:117481498(-) A-I      intronic
chr12:117481807(-) A-I      intronic
chr12:117521135(-) A-I      intronic
chr12:117504079(-) A-I      intronic
chr12:117501868(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED TESC
chr12:117479276(-) A-G intron -    22484847
chr12:117479302(-) A-G intron -    22484847
chr12:117481350(-) A-G intron -    22484847
chr12:117495639(-) A-G intron -    22484847
chr12:117521063(-) A-G intron -    22484847
chr12:117521135(-) A-G intron -    22484847
chr12:117521714(-) A-G intron -    22484847
chr12:117521750(-) A-G intron -    22484847
chr12:117533028(-) A-G intron -    22484847
chr12:117533044(-) A-G intron -    22484847
chr12:117533079(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase TESC
chr12:117476855-117476856(-) m6A 3'UTR       -
chr12:117476913-117476914(-) m6A 3'UTR       27371828
chr12:117476957-117476958(-) m6A 3'UTR//CDS       27371828
chr12:117476990-117476991(-) m6A 3'UTR//CDS       27371828
chr12:117479761-117479762(-) m6A 3'UTR//CDS//intron       27371828
chr12:117486857-117486858(-) m6A CDS//exon       26404942//27371828
chr12:117486912-117486913(-) m6A CDS//exon       26404942
chr12:117537173-117537174(-) m6A 5'UTR//exon       24981863//27371828
chr12:117537217-117537218(-) m6A 5'UTR//exon       24981863//27371828
chr12:117537273-117537274(-) m6A 5'UTR       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate TESC
Chromatin K562 cells     -
Cytosol HCC cell line (HepG2)|K562 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm HCC cell line (HepG2)|K562 cells     -
Nucleus HCC cell line (HepG2)|K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART10-5p
Interactor2: TESC

Evidence Support:


Prediction-Evidence miRanda//RNAHybrid//Targetscan
Support Database VmiReg

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