Detail Information

Basic Information:


  VIRBase ID:  

VHID00400901

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART10-5p:           RBMX:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART10-5p RBMX
miRBase
Accession/Entrez ID		 MIMAT0004817 27316
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - hnRNP-G//HNRNPG//HNRPG//MRXS11//RBMXP1//RBMXRT//RNMX

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR RBMX
chrX:135959721(-) A-I      intronic
chrX:135959379(-) A-I      intronic
chrX:135953226(-) A-I      intronic
chrX:135953885(-) A-I      intronic
chrX:135953433(-) A-I      intronic
chrX:135953541(-) A-I      intronic
chrX:135953577(-) A-I      intronic
chrX:135959011(-) A-I      intronic
chrX:135954046(-) A-I      intronic
chrX:135959143(-) A-I      intronic
chrX:135959434(-) A-I      intronic
chrX:135954103(-) A-I      intronic
chrX:135953197(-) A-I      intronic
chrX:135953216(-) A-I      intronic
chrX:135959447(-) A-I      intronic
chrX:135959758(-) A-I      intronic
chrX:135958959(-) A-I      intronic
chrX:135953892(-) A-I      intronic
chrX:135959055(-) A-I      intronic
chrX:135953894(-) A-I      intronic
chrX:135953436(-) A-I      intronic
chrX:135959369(-) A-I      intronic
chrX:135954062(-) A-I      intronic
chrX:135953014(-) A-I      intronic
chrX:135954084(-) A-I      intronic
chrX:135953944(-) A-I      intronic
chrX:135953934(-) A-I      intronic
chrX:135959074(-) A-I      intronic
chrX:135959409(-) A-I      intronic
chrX:135953874(-) A-I      intronic
chrX:135959253(-) A-I      intronic
chrX:135953210(-) A-I      intronic
chrX:135959431(-) A-I      intronic
chrX:135958995(-) A-I      intronic
chrX:135953411(-) A-I      intronic
chrX:135953363(-) A-I      intronic
chrX:135953221(-) A-I      intronic
chrX:135959774(-) A-I      intronic
chrX:135953165(-) A-I      intronic
chrX:135952733(-) A-I      intronic
chrX:135953488(-) A-I      intronic
chrX:135952868(-) A-I      intronic
chrX:135959241(-) A-I      intronic
chrX:135953478(-) A-I      intronic
chrX:135959117(-) A-I      intronic
chrX:135953844(-) A-I      intronic
chrX:135953871(-) A-I      intronic
chrX:135953972(-) A-I      intronic
chrX:135959150(-) A-I      intronic
chrX:135954054(-) A-I      intronic
chrX:135959077(-) A-I      intronic
chrX:135958129(-) A-I      intronic
chrX:135959747(-) A-I      intronic
chrX:135953876(-) A-I      intronic
chrX:135953881(-) A-I      intronic
chrX:135953161(-) A-I      intronic
chrX:135959004(-) A-I      intronic
chrX:135959066(-) A-I      intronic
chrX:135959712(-) A-I      intronic
chrX:135952878(-) A-I      intronic
chrX:135953943(-) A-I      intronic
chrX:135953362(-) A-I      intronic
chrX:135959718(-) A-I      intronic
chrX:135959686(-) A-I      intronic
chrX:135953084(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED RBMX
chrX:135959686(-) A-G intron -    22484847
chrX:135959747(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase RBMX
chrX:135930218-135930219(-) m6A exon       24284625//25456834//27773535//27371828//22608085
chrX:135930246-135930247(-) m6A exon       24284625//25456834//24981863//27773535//27371828//22608085
chrX:135930268-135930269(-) m6A exon       24284625//25456834//24981863//27773535//27371828//22608085
chrX:135930292-135930293(-) m6A exon       24284625//25456834//24981863//27773535//27371828//22608085
chrX:135930334-135930335(-) m6A exon       24284625//25456834//27773535//27371828//22608085
chrX:135930363-135930364(-) m6A exon       24284625//25456834//27773535//22608085
chrX:135930413-135930414(-) m6A exon       24284625//22608085
chrX:135930436-135930437(-) m6A exon       -
chrX:135930457-135930458(-) m6A exon       -
chrX:135954729-135954730(-) m6A 3'UTR//intron       27773535
chrX:135955623-135955624(-) m6A 3'UTR//exon//intron       24981863//27773535
chrX:135955659-135955660(-) m6A 3'UTR//exon//intron       24981863//27773535
chrX:135955679-135955680(-) m6A 3'UTR//exon//intron       24981863//27773535
chrX:135955706-135955707(-) m6A 3'UTR//exon//intron       24981863//27773535
chrX:135955774-135955775(-) m6A 3'UTR//exon//intron       27773535
chrX:135955960-135955961(-) m6A 3'UTR//exon//intron       27773535
chrX:135956067-135956068(-) m6A 3'UTR//exon//intron       27773535
chrX:135956130-135956131(-) m6A 3'UTR//exon//intron       24981863//27773535//22608085
chrX:135956221-135956222(-) m6A 3'UTR//intron       24284625//25456834//24981863//28052920//27773535//22608085
chrX:135956246-135956247(-) m6A 3'UTR//intron       24284625//25456834//24981863//28052920//27773535//22608085
chrX:135956259-135956260(-) m6A 3'UTR//intron       24284625//25456834//24981863//28052920//27773535//22608085
chrX:135956281-135956282(-) m6A 3'UTR//intron       24284625//25456834//24981863//28052920//27773535//22608085
chrX:135956288-135956289(-) m6A 3'UTR//intron       24284625//24981863//28052920//27773535//22608085
chrX:135956297-135956298(-) m6A 3'UTR//intron       24284625//24981863//28052920//27773535//27371828//22608085
chrX:135956444-135956445(-) m6A 3'UTR//CDS//intron       27773535
chrX:135956502-135956503(-) m6A 3'UTR//CDS//intron       -
chrX:135956704-135956705(-) m6A 3'UTR//intron       -
chrX:135956809-135956810(-) m6A 3'UTR//intron       26404942
chrX:135957694-135957695(-) m6A 3'UTR//CDS       27773535
chrX:135958695-135958696(-) m6A 3'UTR//CDS//intron       27773535
chrX:135958746-135958747(-) m6A 3'UTR//CDS//intron       27773535
chrX:135958767-135958768(-) m6A 3'UTR//CDS//exon//intron       27773535
chrX:135960080-135960081(-) m6A 3'UTR//5'UTR//CDS//exon//intron       27773535
chrX:135960098-135960099(-) m6A 3'UTR//5'UTR//CDS//exon//intron       27773535
chrX:135961258-135961259(-) m6A 3'UTR//CDS//exon//intron       24981863
chrX:135961266-135961267(-) m6A 3'UTR//CDS//exon//intron       24981863
chrX:135961293-135961294(-) m6A 3'UTR//exon//intron       24981863
chrX:135961358-135961359(-) Tm exon//intron       -
chrX:135961385-135961386(-) Am exon//intron       -
chrX:135961531-135961532(-) m6A CDS//exon//intron       24981863
chrX:135961587-135961588(-) m6A 5'UTR//CDS//exon//intron       22575960
chrX:135962773-135962774(-) m6A 5'UTR//exon       22575960

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate RBMX
Chromatin HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol K562 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus Colon cancer cells     24393600
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART10-5p
Interactor2: RBMX

Evidence Support:


Prediction-Evidence miRanda//PITA//RNAHybrid//Targetscan
Support Database VmiReg

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