Detail Information

Basic Information:


  VIRBase ID:  

VHID00400675

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART10-5p:           GGA3:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART10-5p GGA3
miRBase
Accession/Entrez ID		 MIMAT0004817 23163
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - -

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR GGA3
chr17:73248065(-) A-I      intronic
chr17:73248024(-) A-I      intronic
chr17:73248071(-) A-I      intronic
chr17:73248054(-) A-I      intronic
chr17:73248040(-) A-I      intronic
chr17:73244385(-) A-I      intronic
chr17:73245267(-) A-I      intronic
chr17:73245264(-) A-I      intronic
chr17:73254729(-) A-I      intronic
chr17:73254664(-) A-I      intronic
chr17:73255204(-) A-I      intronic
chr17:73245255(-) A-I      intronic
chr17:73248283(-) A-I      intronic
chr17:73247918(-) A-I      intronic
chr17:73245300(-) A-I      intronic
chr17:73245248(-) A-I      intronic
chr17:73245232(-) A-I      intronic
chr17:73244823(-) A-I      intronic
chr17:73244805(-) A-I      intronic
chr17:73244785(-) A-I      intronic
chr17:73244780(-) A-I      intronic
chr17:73244755(-) A-I      intronic
chr17:73244702(-) A-I      intronic
chr17:73247080(-) A-I      intronic
chr17:73244363(-) A-I      intronic
chr17:73243616(-) A-I      intronic
chr17:73243607(-) A-I      intronic
chr17:73243455(-) A-I      intronic
chr17:73241899(-) A-I      intronic
chr17:73255205(-) A-I      intronic
chr17:73255219(-) A-I      intronic
chr17:73255230(-) A-I      intronic
chr17:73247062(-) A-I      intronic
chr17:73255236(-) A-I      intronic
chr17:73255238(-) A-I      intronic
chr17:73255240(-) A-I      intronic
chr17:73256111(-) A-I      intronic
chr17:73256197(-) A-I      intronic
chr17:73256226(-) A-I      intronic
chr17:73245388(-) A-I      intronic
chr17:73245315(-) A-I      intronic
chr17:73245287(-) A-I      intronic
chr17:73245283(-) A-I      intronic
chr17:73245309(-) A-I      intronic
chr17:73246735(-) A-I      intronic
chr17:73255203(-) A-I      intronic
chr17:73254717(-) A-I      intronic
chr17:73244852(-) A-I      intronic
chr17:73248256(-) A-I      intronic
chr17:73243547(-) A-I      intronic
chr17:73248042(-) A-I      intronic
chr17:73246664(-) A-I      intronic
chr17:73243472(-) A-I      intronic
chr17:73247882(-) A-I      intronic
chr17:73256118(-) A-I      intronic
chr17:73247544(-) A-I      intronic
chr17:73248089(-) A-I      intronic
chr17:73254675(-) A-I      intronic
chr17:73246618(-) A-I      intronic
chr17:73255132(-) A-I      intronic
chr17:73255299(-) A-I      intronic
chr17:73248384(-) A-I      intronic
chr17:73246681(-) A-I      intronic
chr17:73243511(-) A-I      intronic
chr17:73254588(-) A-I      intronic
chr17:73254533(-) A-I      intronic
chr17:73247951(-) A-I      intronic
chr17:73248403(-) A-I      intronic
chr17:73246914(-) A-I      intronic
chr17:73244440(-) A-I      intronic
chr17:73254585(-) A-I      intronic
chr17:73246799(-) A-I      intronic
chr17:73245194(-) A-I      intronic
chr17:73243482(-) A-I      intronic
chr17:73255173(-) A-I      intronic
chr17:73244465(-) A-I      intronic
chr17:73245265(-) A-I      intronic
chr17:73248395(-) A-I      intronic
chr17:73243508(-) A-I      intronic
chr17:73248006(-) A-I      intronic
chr17:73256108(-) A-I      intronic
chr17:73255307(-) A-I      intronic
chr17:73245396(-) A-I      intronic
chr17:73256082(-) A-I      intronic
chr17:73247038(-) A-I      intronic
chr17:73244408(-) A-I      intronic
chr17:73248074(-) A-I      intronic
chr17:73246700(-) A-I      intronic
chr17:73255291(-) A-I      intronic
chr17:73246780(-) A-I      intronic
chr17:73245216(-) A-I      intronic
chr17:73255163(-) A-I      intronic
chr17:73245230(-) A-I      intronic
chr17:73244296(-) A-I      intronic
chr17:73247000(-) A-I      intronic
chr17:73248460(-) A-I      intronic
chr17:73254629(-) A-I      intronic
chr17:73244308(-) A-I      intronic
chr17:73255131(-) A-I      intronic
chr17:73256056(-) A-I      intronic
chr17:73247604(-) A-I      intronic
chr17:73248261(-) A-I      intronic
chr17:73247962(-) A-I      intronic
chr17:73247575(-) A-I      intronic
chr17:73247079(-) A-I      intronic
chr17:73247638(-) A-I      intronic
chr17:73248087(-) A-I      intronic
chr17:73247624(-) A-I      intronic
chr17:73243615(-) A-I      intronic
chr17:73256063(-) A-I      intronic
chr17:73256013(-) A-I      intronic
chr17:73255987(-) A-I      intronic
chr17:73248010(-) A-I      intronic
chr17:73248043(-) A-I      intronic
chr17:73255302(-) A-I      intronic
chr17:73243546(-) A-I      intronic
chr17:73248126(-) A-I      intronic
chr17:73247913(-) A-I      intronic
chr17:73254745(-) A-I      intronic
chr17:73256130(-) A-I      intronic
chr17:73247932(-) A-I      intronic
chr17:73245397(-) A-I      intronic
chr17:73248119(-) A-I      intronic
chr17:73245320(-) A-I      intronic
chr17:73248025(-) A-I      intronic
chr17:73244791(-) A-I      intronic
chr17:73245328(-) A-I      intronic
chr17:73256144(-) A-I      intronic
chr17:73247705(-) A-I      intronic
chr17:73255974(-) A-I      intronic
chr17:73254594(-) A-I      intronic
chr17:73243575(-) A-I      intronic
chr17:73254516(-) A-I      intronic
chr17:73248097(-) A-I      intronic
chr17:73256135(-) A-I      intronic
chr17:73256146(-) A-I      intronic
chr17:73254492(-) A-I      intronic
chr17:73256001(-) A-I      intronic
chr17:73248029(-) A-I      intronic
chr17:73254639(-) A-I      intronic
chr17:73246587(-) A-I      intronic
chr17:73247894(-) A-I      intronic
chr17:73246599(-) A-I      intronic
chr17:73246760(-) A-I      intronic
chr17:73247639(-) A-I      intronic
chr17:73246672(-) A-I      intronic
chr17:73254611(-) A-I      intronic
chr17:73256102(-) A-I      intronic
chr17:73245291(-) A-I      intronic
chr17:73256066(-) A-I      intronic
chr17:73248287(-) A-I      intronic
chr17:73247783(-) A-I      intronic
chr17:73245281(-) A-I      intronic
chr17:73246727(-) A-I      intronic
chr17:73248359(-) A-I      intronic
chr17:73245321(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED GGA3
chr17:73247932(-) A-I intron -    22327324
chr17:73243508(-) A-G intron -    22484847
chr17:73246618(-) A-G intron -    22484847
chr17:73246664(-) A-G intron -    22484847
chr17:73246681(-) A-G intron -    22484847
chr17:73247932(-) A-G intron -    22484847
chr17:73247951(-) A-G intron -    22484847
chr17:73248089(-) A-G intron -    22484847
chr17:73248119(-) A-G intron -    22484847
chr17:73254585(-) A-G intron -    22484847
chr17:73256056(-) A-G intron -    22484847
chr17:73256066(-) A-G intron -    22484847
chr17:73256135(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase GGA3
chr17:73232707-73232708(-) m6A 3'UTR//exon       24284625//27773535//22608085
chr17:73232820-73232821(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//22575960//22608085
chr17:73232839-73232840(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//22575960//22608085
chr17:73232891-73232892(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr17:73232951-73232952(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr17:73233079-73233080(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr17:73233099-73233100(-) Gm 3'UTR//exon       -
chr17:73233108-73233109(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr17:73233125-73233126(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr17:73233155-73233156(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr17:73233205-73233206(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr17:73233279-73233280(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr17:73233373-73233374(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr17:73233400-73233401(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr17:73233436-73233437(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22608085
chr17:73233537-73233538(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr17:73233579-73233580(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr17:73233705-73233706(-) m6A 3'UTR//CDS//exon//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr17:73233718-73233719(-) m6A 3'UTR//CDS//exon//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr17:73233794-73233795(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr17:73233833-73233834(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//28052920//27371828//22575960//22608085
chr17:73233996-73233997(-) m6A 3'UTR//exon//intron       24284625//25456834//24981863//27773535//27371828
chr17:73234076-73234077(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22608085
chr17:73234082-73234083(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22608085
chr17:73234169-73234170(-) m6A 3'UTR//CDS//exon//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22608085
chr17:73234208-73234209(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22608085
chr17:73234213-73234214(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22608085
chr17:73234241-73234242(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22608085
chr17:73234366-73234367(-) m6A 3'UTR//CDS//exon//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr17:73234377-73234378(-) m6A 3'UTR//CDS//exon//intron       24284625//25456834//24981863//27371828
chr17:73234396-73234397(-) m6A 3'UTR//CDS//exon//intron       24284625//25456834//24981863//27371828
chr17:73234804-73234805(-) m6A 3'UTR//CDS//exon       27773535
chr17:73234809-73234810(-) m6A 3'UTR//CDS//exon       27773535
chr17:73235046-73235047(-) m6A 3'UTR//CDS//exon//intron       27773535
chr17:73235633-73235634(-) m6A 3'UTR//CDS//exon//intron       24284625//28052920//27773535//27371828
chr17:73235650-73235651(-) m6A 3'UTR//CDS//exon//intron       24284625//28052920//27773535//27371828
chr17:73236146-73236147(-) m6A 3'UTR//CDS//exon       24284625//27773536
chr17:73236169-73236170(-) m6A 3'UTR//CDS//exon       24284625//27773536
chr17:73236183-73236184(-) m6A 3'UTR//CDS//exon       24284625//27773536
chr17:73236616-73236617(-) m6A 3'UTR//exon//intron       25456834//27371828
chr17:73236655-73236656(-) m6A 3'UTR//exon//intron       24284625//25456834//24981863//27371828//27773536
chr17:73236710-73236711(-) m6A 3'UTR//exon//intron       24284625//25456834//24981863//27371828//27773536
chr17:73236777-73236778(-) m6A 3'UTR//exon//intron       25456834//24981863//27371828//27773536
chr17:73236992-73236993(-) m6A 3'UTR//CDS//exon       24284625//24981863//27773535//27371828
chr17:73237086-73237087(-) m6A 3'UTR//CDS//exon       24284625//27773535
chr17:73237134-73237135(-) m6A 3'UTR//CDS//exon       -
chr17:73237543-73237544(-) m6A 3'UTR//CDS//exon       -
chr17:73237593-73237594(-) m6A 3'UTR//CDS//exon       -
chr17:73237638-73237639(-) m6A exon//intron       -
chr17:73237712-73237713(-) m6A 3'UTR//CDS//exon       27773535
chr17:73237719-73237720(-) m6A 3'UTR//CDS//exon       27773535
chr17:73237732-73237733(-) m6A 3'UTR//CDS//exon       27773535
chr17:73237743-73237744(-) m6A 3'UTR//CDS//exon       27773535
chr17:73237754-73237755(-) m6A 3'UTR//CDS//exon       27773535
chr17:73237844-73237845(-) m6A exon//intron       27773535
chr17:73238410-73238411(-) m6A exon//intron       27773535//27371828
chr17:73238432-73238433(-) m6A 3'UTR//CDS//exon       27773535//27371828
chr17:73238447-73238448(-) m6A 3'UTR//CDS//exon       27773535//27371828
chr17:73238485-73238486(-) m6A 3'UTR//CDS//exon       27371828
chr17:73239531-73239532(-) m6A 3'UTR//CDS//exon       27773535
chr17:73239563-73239564(-) Am 3'UTR//CDS//exon       -
chr17:73239587-73239588(-) m6A 3'UTR//5'UTR//CDS//exon       27773535
chr17:73239617-73239618(-) m6A 3'UTR//5'UTR//CDS//exon       27773535
chr17:73239640-73239641(-) m6A 3'UTR//5'UTR//CDS//exon       27773535
chr17:73257709-73257710(-) m6A 5'UTR//intron       24981863
chr17:73257746-73257747(-) m6A 5'UTR//intron       24981863
chr17:73257814-73257815(-) m6A 5'UTR//intron       24981863
chr17:73258410-73258411(-) m6A 5'UTR       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate GGA3
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HCC cell line (HepG2)|K562 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleus HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART10-5p
Interactor2: GGA3

Evidence Support:


Prediction-Evidence miRanda//PITA//Targetscan
Support Database VmiReg

Starting a new search, please wait ...