Detail Information

Basic Information:


  VIRBase ID:  

VHID00400424

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART10-5p:           SF3A1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART10-5p SF3A1
miRBase
Accession/Entrez ID		 MIMAT0004817 10291
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - PRP21//PRPF21//SAP114//SF3A120

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SF3A1
chr22:30743234(-) A-I      intronic
chr22:30743253(-) A-I      intronic
chr22:30744041(-) A-I      intronic
chr22:30744414(-) A-I      intronic
chr22:30746347(-) A-I      intronic
chr22:30746376(-) A-I      intronic
chr22:30746401(-) A-I      intronic
chr22:30747033(-) A-I      intronic
chr22:30747045(-) A-I      intronic
chr22:30747125(-) A-I      intronic
chr22:30747131(-) A-I      intronic
chr22:30747166(-) A-I      intronic
chr22:30747188(-) A-I      intronic
chr22:30747206(-) A-I      intronic
chr22:30747235(-) A-I      intronic
chr22:30747236(-) A-I      intronic
chr22:30747666(-) A-I      intronic
chr22:30747664(-) A-I      intronic
chr22:30750861(-) A-I      intronic
chr22:30746465(-) A-I      intronic
chr22:30743115(-) A-I      intronic
chr22:30745703(-) A-I      intronic
chr22:30743250(-) A-I      intronic
chr22:30743191(-) A-I      intronic
chr22:30747622(-) A-I      intronic
chr22:30747690(-) A-I      intronic
chr22:30744397(-) A-I      intronic
chr22:30745765(-) A-I      intronic
chr22:30745801(-) A-I      intronic
chr22:30747071(-) A-I      intronic
chr22:30747627(-) A-I      intronic
chr22:30744467(-) A-I      intronic
chr22:30747738(-) A-I      intronic
chr22:30743252(-) A-I      intronic
chr22:30735605(-) A-I      intronic
chr22:30747205(-) A-I      intronic
chr22:30744067(-) A-I      intronic
chr22:30747662(-) A-I      intronic
chr22:30747600(-) A-I      intronic
chr22:30747122(-) A-I      intronic
chr22:30746349(-) A-I      intronic
chr22:30745677(-) A-I      intronic
chr22:30745797(-) A-I      intronic
chr22:30743174(-) A-I      intronic
chr22:30745852(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SF3A1
chr22:30730516-30730517(-) m6A 3'UTR       27773535
chr22:30730572-30730573(-) m6A 3'UTR       27773535
chr22:30730581-30730582(-) m6A 3'UTR       27773535
chr22:30731473-30731474(-) m6A CDS       27773535
chr22:30731644-30731645(-) m6A CDS       27773535
chr22:30731685-30731686(-) m6A CDS       27773535
chr22:30733018-30733019(-) m6A CDS       27773535
chr22:30733054-30733055(-) m6A CDS       24284625//27773535
chr22:30733061-30733062(-) m6A CDS       24284625//27773535
chr22:30733068-30733069(-) m6A CDS       24284625//27773535
chr22:30734986-30734987(-) m6A 3'UTR//CDS//exon       24284625//24981863//27773535//27371828//27773536//22575960
chr22:30735101-30735102(-) m6A exon//intron       24981863//27773535
chr22:30735156-30735157(-) Am CDS//exon//intron       -
chr22:30735171-30735172(-) m6A CDS//exon//intron       27773535//22575960
chr22:30736263-30736264(-) m6A CDS//exon//intron       27773535//22575960
chr22:30736278-30736279(-) m6A CDS//exon//intron       27773535//22575960
chr22:30736387-30736388(-) m6A exon//intron       24981863//27773535//27371828//27773536
chr22:30736718-30736719(-) m6A CDS//exon//intron       24981863//27371828
chr22:30736752-30736753(-) m6A CDS//exon//intron       24981863//27773535//27371828
chr22:30737705-30737706(-) m6A CDS//intron       24981863//28052920//26404942//27773535//27371828
chr22:30737711-30737712(-) m6A CDS//intron       24981863//28052920//26404942//27773535//27371828//22575960
chr22:30737746-30737747(-) m6A CDS//intron       24981863//28052920//26404942//27773535//27371828//22575960
chr22:30737870-30737871(-) m6A CDS//intron       24981863//28052920//26404942//27773535//27371828//27773536//22575960
chr22:30738208-30738209(-) m6A CDS//intron       24981863//28052920//26404942//27773535//27371828//27773536//22575960
chr22:30738215-30738216(-) m6A CDS//intron       24981863//28052920//26404942//27773535//27371828//27773536//22575960
chr22:30738555-30738556(-) m6A exon//intron       24981863//27773535//27371828
chr22:30738730-30738731(-) m6A exon//intron       24981863
chr22:30738788-30738789(-) m6A exon//intron       24981863
chr22:30738815-30738816(-) m6A 3'UTR//CDS//exon//intron       24284625//24981863
chr22:30740933-30740934(-) m6A CDS//exon//intron       24284625//27773535
chr22:30741154-30741155(-) m6A CDS//exon//intron       24284625//27773535
chr22:30742252-30742253(-) m6A exon//intron       24284625//24981863//27773535
chr22:30742326-30742327(-) m6A CDS//exon//intron       24284625//24981863//26404942//27773535
chr22:30742439-30742440(-) m6A CDS//exon//intron       24284625//26404942//27773535
chr22:30748585-30748586(-) m6A exon//intron       27773535
chr22:30749050-30749051(-) m1A CDS//exon//intron       26863410//26863196
chr22:30752721-30752722(-) m6A CDS//exon       27371828//27773536
chr22:30752769-30752770(-) m6A CDS//exon       24981863//27371828//27773536
chr22:30752805-30752806(-) m6A 5'UTR//exon       24981863//27371828//27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate SF3A1
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleus Colon cancer cells     24393600
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART10-5p
Interactor2: SF3A1

Evidence Support:


Prediction-Evidence miRanda//Targetscan
Support Database VmiReg

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