Detail Information

Basic Information:


  VIRBase ID:  

VHID00400399

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART10-5p:           LPCAT3:      

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Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART10-5p LPCAT3
miRBase
Accession/Entrez ID		 MIMAT0004817 10162
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - C3F//LPCAT//LPLAT 5//LPSAT//MBOAT5//nessy//OACT5

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR LPCAT3
chr12:7085738(-) A-I      3'UTR
chr12:7094694(-) A-I      intronic
chr12:7094708(-) A-I      intronic
chr12:7085785(-) A-I      3'UTR
chr12:7094727(-) A-I      intronic
chr12:7085730(-) A-I      3'UTR
chr12:7085765(-) A-I      3'UTR
chr12:7122082(-) A-I      intronic
chr12:7085776(-) A-I      3'UTR
chr12:7085777(-) A-I      3'UTR
chr12:7085773(-) A-I      3'UTR
chr12:7085739(-) A-I      3'UTR
chr12:7123689(-) A-I      intronic
chr12:7118693(-) A-I      intronic
chr12:7123876(-) A-I      intronic
chr12:7118698(-) A-I      intronic
chr12:7102456(-) A-I      intronic
chr12:7102367(-) A-I      intronic
chr12:7106256(-) A-I      intronic
chr12:7118264(-) A-I      intronic
chr12:7118938(-) A-I      intronic
chr12:7123683(-) A-I      intronic
chr12:7102438(-) A-I      intronic
chr12:7118715(-) A-I      intronic
chr12:7123677(-) A-I      intronic
chr12:7118388(-) A-I      intronic
chr12:7102368(-) A-I      intronic
chr12:7118560(-) A-I      intronic
chr12:7118478(-) A-I      intronic
chr12:7118214(-) A-I      intronic
chr12:7094616(-) A-I      intronic
chr12:7094671(-) A-I      intronic
chr12:7094763(-) A-I      intronic
chr12:7118503(-) A-I      intronic
chr12:7102372(-) A-I      intronic
chr12:7118914(-) A-I      intronic
chr12:7123966(-) A-I      intronic
chr12:7102444(-) A-I      intronic
chr12:7118504(-) A-I      intronic
chr12:7102402(-) A-I      intronic
chr12:7118900(-) A-I      intronic
chr12:7123881(-) A-I      intronic
chr12:7118747(-) A-I      intronic
chr12:7098452(-) A-I      intronic
chr12:7118215(-) A-I      intronic
chr12:7118758(-) A-I      intronic
chr12:7100118(-) A-I      intronic
chr12:7118867(-) A-I      intronic
chr12:7118853(-) A-I      intronic
chr12:7102437(-) A-I      intronic
chr12:7118770(-) A-I      intronic
chr12:7118781(-) A-I      intronic
chr12:7100144(-) A-I      intronic
chr12:7118831(-) A-I      intronic
chr12:7118784(-) A-I      intronic
chr12:7118389(-) A-I      intronic
chr12:7106259(-) A-I      intronic
chr12:7118829(-) A-I      intronic
chr12:7118259(-) A-I      intronic
chr12:7085721(-) A-I      3'UTR
chr12:7085642(-) A-I      3'UTR
chr12:7085643(-) A-I      3'UTR
chr12:7085707(-) A-I      3'UTR
chr12:7085743(-) A-I      3'UTR
chr12:7116013(-) A-I      intronic
chr12:7116011(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED LPCAT3
chr12:7097098(-) A-I intron -    22327324

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase LPCAT3
chr12:7085386-7085387(-) m6A 3'UTR       27773535
chr12:7085593-7085594(-) m6A 3'UTR       27773535
chr12:7086541-7086542(-) m6A 3'UTR//CDS//exon       27773535
chr12:7086599-7086600(-) m6A 3'UTR//CDS//exon       27773535
chr12:7086720-7086721(-) m6A 3'UTR//intron       27773535
chr12:7087124-7087125(-) m6A 3'UTR//intron       -
chr12:7087566-7087567(-) m6A 3'UTR//CDS//exon//intron       27773535
chr12:7091939-7091940(-) m6A 3'UTR//CDS//exon//intron       27773535
chr12:7092652-7092653(-) m6A 3'UTR//CDS//intron       27773535
chr12:7108788-7108789(-) m6A CDS//intron       27773535
chr12:7125611-7125612(-) m6A CDS//exon       25456834//27773535
chr12:7125697-7125698(-) m6A CDS//exon       24284625//25456834//24981863//27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate LPCAT3
Chromatin K562 cells     -
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus Nasopharyngeal carcinoma cells     20498841
Nucleus HCC cell line (HepG2)|K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART10-5p
Interactor2: LPCAT3

Evidence Support:


Prediction-Evidence miRanda//PITA//RNAHybrid//Targetscan
Support Database VmiReg

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