Detail Information

Basic Information:


  VIRBase ID:  

VHID00400033

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART10-5p:           BRD3:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART10-5p BRD3
miRBase
Accession/Entrez ID		 MIMAT0004817 8019
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - ORFX//RING3L

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR BRD3
chr9:136908064(-) A-I      intronic
chr9:136903658(-) A-I      intronic
chr9:136907673(-) A-I      intronic
chr9:136907697(-) A-I      intronic
chr9:136907997(-) A-I      intronic
chr9:136908058(-) A-I      intronic
chr9:136895540(-) A-I      3'UTR
chr9:136895595(-) A-I      3'UTR
chr9:136895581(-) A-I      3'UTR
chr9:136895572(-) A-I      3'UTR
chr9:136895545(-) A-I      3'UTR
chr9:136895563(-) A-I      3'UTR
chr9:136895530(-) A-I      3'UTR
chr9:136895532(-) A-I      3'UTR
chr9:136895533(-) A-I      3'UTR
chr9:136895535(-) A-I      3'UTR
chr9:136895538(-) A-I      3'UTR
chr9:136907604(-) A-I      intronic
chr9:136908086(-) A-I      intronic
chr9:136908236(-) A-I      intronic
chr9:136908131(-) A-I      intronic
chr9:136907745(-) A-I      intronic
chr9:136908029(-) A-I      intronic
chr9:136907992(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase BRD3
chr9:136895866-136895867(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr9:136895874-136895875(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr9:136895912-136895913(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085
chr9:136895919-136895920(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085
chr9:136895924-136895925(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085
chr9:136895972-136895973(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085
chr9:136896052-136896053(-) m6A 3'UTR       24284625//25456834//24981863//27773535//22608085
chr9:136896196-136896197(-) m6A 3'UTR       24284625
chr9:136896577-136896578(-) m6A 3'UTR       24981863
chr9:136896586-136896587(-) m6A 3'UTR       24981863
chr9:136897408-136897409(-) m6A 3'UTR       27773535
chr9:136897428-136897429(-) m6A 3'UTR       27773535
chr9:136897456-136897457(-) m6A 3'UTR       27773535
chr9:136897771-136897772(-) m6A 3'UTR       24981863
chr9:136897957-136897958(-) m6A 3'UTR       24284625
chr9:136898063-136898064(-) m6A 3'UTR       25456834//24981863//27371828
chr9:136898185-136898186(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr9:136898207-136898208(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr9:136898402-136898403(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr9:136898426-136898427(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr9:136898510-136898511(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr9:136898529-136898530(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr9:136898664-136898665(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr9:136898688-136898689(-) Cm 3'UTR//exon       -
chr9:136898689-136898690(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr9:136898694-136898695(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr9:136898699-136898700(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr9:136898710-136898711(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr9:136899934-136899935(-) m6A CDS//exon       24284625//25456834//24981863//27773535//27371828//27773536//22608085
chr9:136901160-136901161(-) m6A 3'UTR//CDS//exon       24284625//25456834//24981863//27773535//27371828//27773536//22608085
chr9:136901205-136901206(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22608085
chr9:136901223-136901224(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22608085
chr9:136901231-136901232(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22608085
chr9:136901266-136901267(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr9:136901341-136901342(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr9:136901445-136901446(-) m6A 3'UTR//CDS//exon       24284625//27371828//27773536
chr9:136901479-136901480(-) m6A 3'UTR//intron       27371828//27773536
chr9:136905198-136905199(-) m1A CDS//intron       26863196
chr9:136905240-136905241(-) m1A CDS//intron       26863196
chr9:136905290-136905291(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr9:136905300-136905301(-) m1A CDS//intron       26863410//26863196
chr9:136905315-136905316(-) m1A CDS//intron       26863410//26863196
chr9:136905327-136905328(-) m1A CDS//intron       26863410//26863196
chr9:136905341-136905342(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960
chr9:136906927-136906928(-) m6A CDS       24284625//24209618//27371828//27773536
chr9:136906942-136906943(-) m6A CDS       24284625//24209618//27371828//27773536
chr9:136910448-136910449(-) m6A CDS       24284625//27773535//27371828//27773536
chr9:136913220-136913221(-) m6A CDS//exon       24284625//24981863//27773535//27371828//27773536
chr9:136913415-136913416(-) m6A CDS//exon       24284625//27371828//27773536
chr9:136913484-136913485(-) m6A CDS//exon       24284625//27371828//27773536
chr9:136913550-136913551(-) m6A CDS//exon       24284625//24981863//27773535//27371828//27773536
chr9:136917467-136917468(-) m6A CDS       27773535
chr9:136917511-136917512(-) m6A CDS       27773535
chr9:136917525-136917526(-) m6A CDS       27773535
chr9:136917542-136917543(-) m6A CDS       27773535
chr9:136918393-136918394(-) m6A CDS       27773535
chr9:136918443-136918444(-) m6A CDS       24284625//27773535
chr9:136918493-136918494(-) m6A CDS       24284625//27773535//27371828//27773536
chr9:136918540-136918541(-) m6A CDS       24284625//27371828//27773536
chr9:136921080-136921081(-) m6A 5'UTR//intron       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate BRD3
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleus HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART10-5p
Interactor2: BRD3

Evidence Support:


Prediction-Evidence miRanda//PITA
Support Database VmiReg

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