Detail Information

Basic Information:


  VIRBase ID:  

VHID00398558

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART9-5p:           TMEM68:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART9-5p TMEM68
miRBase
Accession/Entrez ID		 MIMAT0004816 137695
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - -

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR TMEM68
chr8:56660777(-) A-I      intronic
chr8:56665432(-) A-I      intronic
chr8:56683943(-) A-I      intronic
chr8:56682380(-) A-I      intronic
chr8:56667692(-) A-I      intronic
chr8:56679068(-) A-I      intronic
chr8:56679074(-) A-I      intronic
chr8:56679207(-) A-I      intronic
chr8:56681039(-) A-I      intronic
chr8:56681056(-) A-I      intronic
chr8:56681088(-) A-I      intronic
chr8:56681093(-) A-I      intronic
chr8:56682385(-) A-I      intronic
chr8:56683576(-) A-I      intronic
chr8:56683969(-) A-I      intronic
chr8:56679100(-) A-I      intronic
chr8:56653709(-) A-I      intronic
chr8:56653708(-) A-I      intronic
chr8:56653728(-) A-I      intronic
chr8:56655137(-) A-I      intronic
chr8:56657043(-) A-I      intronic
chr8:56657044(-) A-I      intronic
chr8:56657045(-) A-I      intronic
chr8:56657047(-) A-I      intronic
chr8:56658337(-) A-I      5'UTR
chr8:56658788(-) A-I      5'UTR
chr8:56658813(-) A-I      5'UTR
chr8:56658828(-) A-I      5'UTR
chr8:56658793(-) A-I      5'UTR
chr8:56658780(-) A-I      5'UTR
chr8:56658775(-) A-I      5'UTR
chr8:56658762(-) A-I      5'UTR
chr8:56658758(-) A-I      5'UTR
chr8:56659800(-) A-I      5'UTR
chr8:56659809(-) A-I      5'UTR
chr8:56683013(-) A-I      intronic
chr8:56660864(-) A-I      intronic
chr8:56681257(-) A-I      intronic
chr8:56665457(-) A-I      intronic
chr8:56652976(-) A-I      intronic
chr8:56660803(-) A-I      intronic
chr8:56661400(-) A-I      intronic
chr8:56665381(-) A-I      intronic
chr8:56660855(-) A-I      intronic
chr8:56665540(-) A-I      intronic
chr8:56683029(-) A-I      intronic
chr8:56661268(-) A-I      intronic
chr8:56653368(-) A-I      intronic
chr8:56652982(-) A-I      intronic
chr8:56668009(-) A-I      intronic
chr8:56665060(-) A-I      intronic
chr8:56684089(-) A-I      intronic
chr8:56681248(-) A-I      intronic
chr8:56684064(-) A-I      intronic
chr8:56681716(-) A-I      intronic
chr8:56683630(-) A-I      intronic
chr8:56665394(-) A-I      intronic
chr8:56654601(-) A-I      intronic
chr8:56683602(-) A-I      intronic
chr8:56654539(-) A-I      intronic
chr8:56666836(-) A-I      intronic
chr8:56659765(-) A-I      5'UTR
chr8:56658376(-) A-I      5'UTR
chr8:56659874(-) A-I      5'UTR
chr8:56659882(-) A-I      5'UTR
chr8:56659666(-) A-I      5'UTR
chr8:56658410(-) A-I      5'UTR
chr8:56660134(-) A-I      5'UTR
chr8:56658753(-) A-I      5'UTR
chr8:56660183(-) A-I      5'UTR
chr8:56659839(-) A-I      5'UTR
chr8:56658393(-) A-I      5'UTR
chr8:56659756(-) A-I      5'UTR
chr8:56658394(-) A-I      5'UTR
chr8:56658812(-) A-I      5'UTR
chr8:56658345(-) A-I      5'UTR
chr8:56658791(-) A-I      5'UTR
chr8:56654487(-) A-I      intronic
chr8:56653786(-) A-I      intronic
chr8:56658617(-) A-I      intronic
chr8:56684117(-) A-I      intronic
chr8:56665061(-) A-I      intronic
chr8:56684054(-) A-I      intronic
chr8:56682483(-) A-I      intronic
chr8:56667904(-) A-I      intronic
chr8:56682268(-) A-I      intronic
chr8:56683916(-) A-I      intronic
chr8:56655237(-) A-I      intronic
chr8:56653784(-) A-I      intronic
chr8:56683063(-) A-I      intronic
chr8:56682448(-) A-I      intronic
chr8:56660817(-) A-I      intronic
chr8:56667946(-) A-I      intronic
chr8:56667601(-) A-I      intronic
chr8:56682356(-) A-I      intronic
chr8:56683230(-) A-I      intronic
chr8:56654557(-) A-I      intronic
chr8:56654532(-) A-I      intronic
chr8:56655177(-) A-I      intronic
chr8:56684174(-) A-I      intronic
chr8:56667936(-) A-I      intronic
chr8:56653374(-) A-I      intronic
chr8:56683592(-) A-I      intronic
chr8:56681265(-) A-I      intronic
chr8:56653610(-) A-I      intronic
chr8:56654593(-) A-I      intronic
chr8:56661396(-) A-I      intronic
chr8:56652981(-) A-I      intronic
chr8:56682330(-) A-I      intronic
chr8:56655243(-) A-I      intronic
chr8:56655202(-) A-I      intronic
chr8:56681734(-) A-I      intronic
chr8:56661271(-) A-I      intronic
chr8:56663369(-) A-I      intronic
chr8:56666485(-) A-I      intronic
chr8:56676111(-) A-I      intronic
chr8:56653752(-) A-I      intronic
chr8:56683458(-) A-I      intronic
chr8:56663383(-) A-I      intronic
chr8:56667987(-) A-I      intronic
chr8:56661290(-) A-I      intronic
chr8:56660792(-) A-I      intronic
chr8:56666403(-) A-I      intronic
chr8:56676032(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED TMEM68
chr8:56658792(-) A-I intron -    15258596
chr8:56659839(-) A-I intron -    15258596
chr8:56659852(-) A-I intron -    15258596
chr8:56659882(-) A-I intron -    15258596
chr8:56653368(-) A-G intron -    22484847
chr8:56653691(-) A-G intron -    22484847
chr8:56655237(-) A-G intron -    22484847
chr8:56658372(-) A-G intron -    22484847
chr8:56658376(-) A-G intron -    22484847
chr8:56658393(-) A-G intron -    22484847
chr8:56658402(-) A-G intron -    22484847
chr8:56658410(-) A-G intron -    22484847
chr8:56658791(-) A-G intron -    22484847
chr8:56658792(-) A-G intron -    22484847
chr8:56658812(-) A-G intron -    22484847
chr8:56658856(-) A-G intron -    22484847
chr8:56659756(-) A-G intron -    22484847
chr8:56660183(-) A-G intron -    22484847
chr8:56661268(-) A-G intron -    22484847
chr8:56661290(-) A-G intron -    22484847
chr8:56682268(-) A-G intron -    22484847
chr8:56682320(-) A-G intron -    22484847
chr8:56682356(-) A-G intron -    22484847
chr8:56683630(-) A-G intron -    22484847
chr8:56683976(-) A-G intron -    22484847
chr8:56684076(-) A-G intron -    22484847
chr8:56684089(-) A-G intron -    22484847
chr8:56684117(-) A-G intron -    22484847
chr8:56684174(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase TMEM68
chr8:56651331-56651332(-) m6A 3'UTR//exon//intron       27773535
chr8:56656101-56656102(-) m6A 3'UTR//CDS//exon//intron       -
chr8:56657622-56657623(-) m6A CDS//exon//intron       -
chr8:56674889-56674890(-) m6A 3'UTR//intron       27773535
chr8:56674909-56674910(-) m6A 3'UTR//intron       27773535
chr8:56674928-56674929(-) m6A 3'UTR//intron       27773535
chr8:56674962-56674963(-) m6A 3'UTR//intron       27773535
chr8:56674979-56674980(-) m6A 3'UTR//intron       27773535
chr8:56675139-56675140(-) m6A CDS//intron       24981863
chr8:56675393-56675394(-) m6A CDS//intron       24981863//26404942//27773535//22608085
chr8:56675411-56675412(-) m6A CDS//intron       24284625//24981863//26404942//27773535//22608085
chr8:56675485-56675486(-) m6A CDS//intron       24284625//24981863//27773535//22608085
chr8:56675499-56675500(-) m6A CDS//intron       24284625//24981863//27773535//22608085
chr8:56675510-56675511(-) m6A CDS//intron       24284625//24981863//27773535//22608085
chr8:56675547-56675548(-) m6A 5'UTR//intron       24284625//24981863//27773535//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate TMEM68
Chromatin K562 cells     -
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART9-5p
Interactor2: TMEM68

Evidence Support:


Prediction-Evidence miRanda//PITA//Targetscan
Support Database VmiReg

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