Basic Information:

  VIRBase ID:  

VHID00398461

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART9-5p:  MIMAT0004816          PXYLP1:  NM_152282     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART9-5p	PXYLP1
miRBase Accession/Entrez ID	MIMAT0004816	92370
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	ACPL2//HEL124//XYLP

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	PXYLP1	chr3:140980284(+) A-I      intronic chr3:140980259(+) A-I      intronic chr3:140980258(+) A-I      intronic chr3:140976582(+) A-I      intronic chr3:140976579(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	PXYLP1	chr3:140950743-140950744(+) m6A 5'UTR//exon//intron       24981863 chr3:140995529-140995530(+) Gm intron       - chr3:141006235-141006236(+) m6A 3'UTR//CDS//exon       24284625 chr3:141006291-141006292(+) m6A 3'UTR//CDS//exon       24284625//22608085 chr3:141011164-141011165(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr3:141011170-141011171(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr3:141011196-141011197(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr3:141011213-141011214(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr3:141011231-141011232(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr3:141011355-141011356(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr3:141011406-141011407(+) m6A CDS       24284625//24209618//24981863//22608085 chr3:141011423-141011424(+) m6A CDS       24284625//24209618//24981863//22608085 chr3:141011490-141011491(+) m6A CDS       24284625//24209618//24981863//22608085 chr3:141011579-141011580(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr3:141011664-141011665(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr3:141011669-141011670(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr3:141011832-141011833(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr3:141011851-141011852(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr3:141011913-141011914(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr3:141011955-141011956(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr3:141011979-141011980(+) m6A CDS       24284625//24209618//25456834//24981863//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	PXYLP1	Exosome Blood     - Nucleus HCC cell line (HepG2)     - Ribosome HEK-293 cells     22199352

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART9-5p
Interactor2: PXYLP1

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg