Basic Information:

  VIRBase ID:  

VHID00398305

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART9-5p:  MIMAT0004816          SETD6:  NM_001160305     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART9-5p	SETD6
miRBase Accession/Entrez ID	MIMAT0004816	79918
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SETD6	chr16:58551428(+) A-I      intronic chr16:58551508(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SETD6	chr16:58549438-58549439(+) m6A 5'UTR//exon       24209618//25456834//24981863//27371828//27773536//22608085 chr16:58549530-58549531(+) m6A exon//intron       24284625//24209618//25456834//24981863//27371828//27773536//22608085 chr16:58549666-58549667(+) m6A exon//intron       24284625//25456834//27371828//27773536//22608085 chr16:58549811-58549812(+) m6A CDS//exon//intron       24209618//27773536 chr16:58550537-58550538(+) m6A CDS//exon//intron       24284625 chr16:58550720-58550721(+) m6A CDS//exon//intron       24284625 chr16:58552259-58552260(+) m6A exon//intron       - chr16:58552277-58552278(+) m6A exon//intron       - chr16:58552306-58552307(+) m6A 3'UTR//CDS//exon       24981863 chr16:58552312-58552313(+) m6A 3'UTR//CDS//exon       24284625//24981863 chr16:58552362-58552363(+) m6A 3'UTR//CDS//exon       24284625//24981863//22575960//22608085 chr16:58552667-58552668(+) m6A 3'UTR//CDS//exon       24284625//24209618//24981863//27773535//22575960//22608085 chr16:58552749-58552750(+) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr16:58552763-58552764(+) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr16:58552786-58552787(+) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr16:58552799-58552800(+) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr16:58552807-58552808(+) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr16:58552848-58552849(+) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr16:58552863-58552864(+) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr16:58552956-58552957(+) m6A 3'UTR//exon       24284625//24209618//24981863//22608085 chr16:58552968-58552969(+) m6A 3'UTR//exon       24284625//24209618//24981863//22608085 chr16:58553039-58553040(+) m6A 3'UTR       24284625//24209618//24981863//22608085 chr16:58553114-58553115(+) m6A 3'UTR       24284625//22608085 chr16:58553121-58553122(+) m6A 3'UTR       24284625//22608085 chr16:58553847-58553848(+) m6A 3'UTR       - chr16:58553952-58553953(+) m6A 3'UTR       - chr16:58553969-58553970(+) m6A 3'UTR       - chr16:58554071-58554072(+) m6A 3'UTR       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SETD6	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HeLa-S3 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART9-5p
Interactor2: SETD6

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg