Basic Information:

  VIRBase ID:  

VHID00398240

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.6002

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART9-5p:  MIMAT0004816          IFT22:  NM_001287525     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART9-5p	IFT22
miRBase Accession/Entrez ID	MIMAT0004816	64792
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	FAP9//RABL5

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	IFT22	chr7:100959963(-) A-I      intronic chr7:100961718(-) A-I      intronic chr7:100961757(-) A-I      intronic chr7:100962093(-) A-I      intronic chr7:100963090(-) A-I      intronic chr7:100962096(-) A-I      intronic chr7:100962050(-) A-I      intronic chr7:100962088(-) A-I      intronic chr7:100962082(-) A-I      intronic chr7:100957715(-) A-I      3'UTR chr7:100957665(-) A-I      3'UTR chr7:100957709(-) A-I      3'UTR chr7:100957357(-) A-I      3'UTR chr7:100957602(-) A-I      3'UTR chr7:100957223(-) A-I      3'UTR chr7:100957301(-) A-I      3'UTR chr7:100957614(-) A-I      3'UTR chr7:100957388(-) A-I      3'UTR chr7:100961657(-) A-I      intronic chr7:100963311(-) A-I      intronic chr7:100962032(-) A-I      intronic chr7:100961629(-) A-I      intronic chr7:100962095(-) A-I      intronic chr7:100961185(-) A-I      intronic chr7:100963265(-) A-I      intronic chr7:100961738(-) A-I      intronic chr7:100961583(-) A-I      intronic chr7:100961689(-) A-I      intronic chr7:100956846(-) A-I      3'UTR chr7:100957645(-) A-I      3'UTR chr7:100957616(-) A-I      3'UTR chr7:100956684(-) A-I      3'UTR chr7:100957620(-) A-I      3'UTR chr7:100957687(-) A-I      3'UTR chr7:100957326(-) A-I      3'UTR chr7:100957262(-) A-I      3'UTR chr7:100957576(-) A-I      3'UTR chr7:100957686(-) A-I      3'UTR chr7:100957365(-) A-I      3'UTR chr7:100957566(-) A-I      3'UTR chr7:100956884(-) A-I      3'UTR chr7:100956793(-) A-I      3'UTR chr7:100956738(-) A-I      3'UTR chr7:100957384(-) A-I      3'UTR chr7:100957332(-) A-I      3'UTR chr7:100957333(-) A-I      3'UTR chr7:100957286(-) A-I      3'UTR chr7:100956885(-) A-I      3'UTR chr7:100956742(-) A-I      3'UTR chr7:100957313(-) A-I      3'UTR chr7:100957615(-) A-I      3'UTR chr7:100957205(-) A-I      3'UTR chr7:100956796(-) A-I      3'UTR chr7:100957334(-) A-I      3'UTR chr7:100957276(-) A-I      3'UTR chr7:100957575(-) A-I      3'UTR chr7:100956862(-) A-I      3'UTR chr7:100962010(-) A-I      intronic chr7:100961644(-) A-I      intronic chr7:100962116(-) A-I      intronic chr7:100962166(-) A-I      intronic chr7:100962056(-) A-I      intronic chr7:100962094(-) A-I      intronic chr7:100961638(-) A-I      intronic chr7:100961701(-) A-I      intronic chr7:100961986(-) A-I      intronic chr7:100959961(-) A-I      intronic chr7:100962066(-) A-I      intronic chr7:100961669(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	IFT22	chr7:100957806-100957807(-) m6A 3'UTR       24981863 chr7:100957890-100957891(-) m6A 3'UTR       24981863//27773535 chr7:100957925-100957926(-) m6A 3'UTR       24981863//27773535 chr7:100957948-100957949(-) m6A 3'UTR       24981863//27773535//22608085 chr7:100957966-100957967(-) m6A 3'UTR       24981863//27773535//22608085 chr7:100958115-100958116(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//22608085 chr7:100958126-100958127(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//22608085 chr7:100958171-100958172(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//22608085 chr7:100958182-100958183(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22608085 chr7:100958252-100958253(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr7:100958397-100958398(-) m6A 3'UTR//exon       24284625//24209618//24981863//22575960//22608085 chr7:100958442-100958443(-) m6A 3'UTR//CDS//exon       24284625//24209618//24981863 chr7:100958526-100958527(-) m6A 3'UTR//CDS//exon       24284625

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	IFT22	Exosome Blood     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART9-5p
Interactor2: IFT22

Evidence Support:

Weak-Evidence	PAR-CLIP
Prediction-Evidence	miRanda//PARalyzer//Targetscan
Support Database	ViRBase//VIRmiRNA//VmiReg

References:

PMID	22100165	Target region	3'UTR
Source	ViRBase//VIRmiRNA//VmiReg	Interactor1 expression	None
Tissue or cell line	BC-1 cells	Interactor2 expression	Downregulation
Description	Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites.Clusters with seed matches to expressed miRNAs were considered candidate target sites. Of the clusters mapping to human 3'UTRs, 69% (BC-1) and 70% (BC-3) had seed matches to expressed miRNAs (Tables S6).Table S6A BC-1 derived 3'UTR clusters with seed matches to expressed miRNAs.