Basic Information:

  VIRBase ID:  

VHID00397877

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART9-5p:  MIMAT0004816          PRPF31:  NM_015629     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART9-5p	PRPF31
miRBase Accession/Entrez ID	MIMAT0004816	26121
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	NY-BR-99//PRP31//RP11//SNRNP61

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	PRPF31	chr19:54619422(+) A-I      intronic chr19:54619726(+) A-I      intronic chr19:54619786(+) A-I      intronic chr19:54622508(+) A-I      intronic chr19:54622749(+) A-I      intronic chr19:54623090(+) A-I      intronic chr19:54622772(+) A-I      intronic chr19:54619724(+) A-I      intronic chr19:54620279(+) A-I      intronic chr19:54623076(+) A-I      intronic chr19:54620220(+) A-I      intronic chr19:54624256(+) A-I      intronic chr19:54619555(+) A-I      intronic chr19:54620977(+) A-I      intronic chr19:54619543(+) A-I      intronic chr19:54620400(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	PRPF31	chr19:54621009(+) T-C intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	PRPF31	chr19:54619065-54619066(+) m6A 5'UTR       25456834//24981863 chr19:54619080-54619081(+) m6A 5'UTR       24981863 chr19:54619154-54619155(+) m6A 5'UTR       24284625//24209618//25456834//24981863//27773535//22608085 chr19:54619192-54619193(+) m6A 5'UTR//intron       24284625//24209618//25456834//24981863//27773535//22608085 chr19:54619234-54619235(+) m1A 5'UTR//intron       26863196//26863410 chr19:54621737-54621738(+) m1A CDS       26863196//26863410 chr19:54621772-54621773(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr19:54621805-54621806(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr19:54625303-54625304(+) Gm CDS//exon       - chr19:54625924-54625925(+) m6A CDS//exon       24284625//22575960 chr19:54626851-54626852(+) m6A CDS//exon       24284625//26404942 chr19:54626863-54626864(+) m6A CDS//exon       24284625 chr19:54626872-54626873(+) m6A CDS//exon       24284625 chr19:54629963-54629964(+) m6A CDS//exon       24981863 chr19:54631458-54631459(+) m6A CDS//exon//intron       24284625//24209618//24981863 chr19:54631548-54631549(+) m6A CDS//exon       24284625//24209618//24981863 chr19:54631749-54631750(+) Gm CDS//exon       - chr19:54632456-54632457(+) m6A CDS//exon       24284625//24209618//24981863//22575960 chr19:54632512-54632513(+) m6A CDS//exon       24284625//24209618//24981863//22575960 chr19:54632571-54632572(+) m6A CDS//exon//intron       24284625//24209618//24981863//22575960 chr19:54632589-54632590(+) m6A CDS//exon//intron       24284625//24209618 chr19:54632597-54632598(+) m6A CDS//exon//intron       24284625//24209618 chr19:54632649-54632650(+) m6A CDS//exon       24284625 chr19:54634753-54634754(+) m6A 3'UTR//CDS//exon       24284625//22575960 chr19:54634901-54634902(+) m6A 3'UTR//exon       24284625//25456834//24981863//22575960//22608085 chr19:54634953-54634954(+) m6A 3'UTR//exon       24284625//25456834//24981863//26404942//22575960//22608085 chr19:54634983-54634984(+) m6A 3'UTR//exon       24284625//25456834//24981863//26404942//22575960//22608085 chr19:54635032-54635033(+) m6A 3'UTR//exon       24284625//25456834//24981863//27773535//22575960//22608085 chr19:54635132-54635133(+) m6A 3'UTR//exon       24284625//25456834//24981863//27773535//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	PRPF31	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HCC cell line (HepG2)|HeLa-S3 cells     - Exosome Blood     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART9-5p
Interactor2: PRPF31

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg