Basic Information:

  VIRBase ID:  

VHID00397816

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.6002

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART9-5p:  MIMAT0004816          FNBP4:  NM_001318339     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART9-5p	FNBP4
miRBase Accession/Entrez ID	MIMAT0004816	23360
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	FBP30

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	FNBP4	chr11:47770951(-) A-I      intronic chr11:47770987(-) A-I      intronic chr11:47769086(-) A-I      intronic chr11:47740820(-) A-I      intronic chr11:47769077(-) A-I      intronic chr11:47769071(-) A-I      intronic chr11:47769053(-) A-I      intronic chr11:47761818(-) A-I      intronic chr11:47762312(-) A-I      intronic chr11:47761823(-) A-I      intronic chr11:47740856(-) A-I      intronic chr11:47761855(-) A-I      intronic chr11:47770948(-) A-I      intronic chr11:47770970(-) A-I      intronic chr11:47770969(-) A-I      intronic chr11:47762317(-) A-I      intronic chr11:47761837(-) A-I      intronic chr11:47761505(-) A-I      intronic chr11:47765872(-) A-I      intronic chr11:47744434(-) A-I      intronic chr11:47760524(-) A-I      intronic chr11:47760499(-) A-I      intronic chr11:47768793(-) A-I      intronic chr11:47760466(-) A-I      intronic chr11:47785325(-) A-I      intronic chr11:47760458(-) A-I      intronic chr11:47760453(-) A-I      intronic chr11:47760305(-) A-I      intronic chr11:47765904(-) A-I      intronic chr11:47760071(-) A-I      intronic chr11:47774319(-) A-I      intronic chr11:47760054(-) A-I      intronic chr11:47782921(-) A-I      intronic chr11:47784324(-) A-I      intronic chr11:47770568(-) A-I      intronic chr11:47784649(-) A-I      intronic chr11:47784746(-) A-I      intronic chr11:47780246(-) A-I      intronic chr11:47779247(-) A-I      intronic chr11:47785105(-) A-I      intronic chr11:47760048(-) A-I      intronic chr11:47760035(-) A-I      intronic chr11:47765916(-) A-I      intronic chr11:47783863(-) A-I      intronic chr11:47765923(-) A-I      intronic chr11:47768170(-) A-I      intronic chr11:47768172(-) A-I      intronic chr11:47759995(-) A-I      intronic chr11:47759993(-) A-I      intronic chr11:47768205(-) A-I      intronic chr11:47784525(-) A-I      intronic chr11:47768304(-) A-I      intronic chr11:47768305(-) A-I      intronic chr11:47759977(-) A-I      intronic chr11:47758607(-) A-I      intronic chr11:47759953(-) A-I      intronic chr11:47768625(-) A-I      intronic chr11:47768646(-) A-I      intronic chr11:47768842(-) A-I      intronic chr11:47780289(-) A-I      intronic chr11:47769296(-) A-I      intronic chr11:47768854(-) A-I      intronic chr11:47768872(-) A-I      intronic chr11:47768889(-) A-I      intronic chr11:47768894(-) A-I      intronic chr11:47768987(-) A-I      intronic chr11:47769126(-) A-I      intronic chr11:47769243(-) A-I      intronic chr11:47780751(-) A-I      intronic chr11:47754502(-) A-I      intronic chr11:47781016(-) A-I      intronic chr11:47785281(-) A-I      intronic chr11:47784244(-) A-I      intronic chr11:47781008(-) A-I      intronic chr11:47759924(-) A-I      intronic chr11:47761233(-) A-I      intronic chr11:47759876(-) A-I      intronic chr11:47783759(-) A-I      intronic chr11:47759875(-) A-I      intronic chr11:47783732(-) A-I      intronic chr11:47744336(-) A-I      intronic chr11:47783569(-) A-I      intronic chr11:47783560(-) A-I      intronic chr11:47783227(-) A-I      intronic chr11:47760361(-) A-I      intronic chr11:47770717(-) A-I      intronic chr11:47769257(-) A-I      intronic chr11:47761770(-) A-I      intronic chr11:47759874(-) A-I      intronic chr11:47761468(-) A-I      intronic chr11:47769334(-) A-I      intronic chr11:47769378(-) A-I      intronic chr11:47769390(-) A-I      intronic chr11:47769418(-) A-I      intronic chr11:47769424(-) A-I      intronic chr11:47769448(-) A-I      intronic chr11:47769486(-) A-I      intronic chr11:47762283(-) A-I      intronic chr11:47759525(-) A-I      intronic chr11:47769601(-) A-I      intronic chr11:47759477(-) A-I      intronic chr11:47760005(-) A-I      intronic chr11:47778864(-) A-I      intronic chr11:47761907(-) A-I      intronic chr11:47759437(-) A-I      intronic chr11:47785181(-) A-I      intronic chr11:47785221(-) A-I      intronic chr11:47785231(-) A-I      intronic chr11:47744416(-) A-I      intronic chr11:47785233(-) A-I      intronic chr11:47759384(-) A-I      intronic chr11:47758513(-) A-I      intronic chr11:47785242(-) A-I      intronic chr11:47785278(-) A-I      intronic chr11:47769827(-) A-I      intronic chr11:47759383(-) A-I      intronic chr11:47770262(-) A-I      intronic chr11:47762282(-) A-I      intronic chr11:47759382(-) A-I      intronic chr11:47770105(-) A-I      intronic chr11:47770277(-) A-I      intronic chr11:47759219(-) A-I      intronic chr11:47761469(-) A-I      intronic chr11:47759267(-) A-I      intronic chr11:47759162(-) A-I      intronic chr11:47761589(-) A-I      intronic chr11:47758753(-) A-I      intronic chr11:47762431(-) A-I      intronic chr11:47758707(-) A-I      intronic chr11:47770313(-) A-I      intronic chr11:47758564(-) A-I      intronic chr11:47761762(-) A-I      intronic chr11:47756020(-) A-I      intronic chr11:47756006(-) A-I      intronic chr11:47755999(-) A-I      intronic chr11:47755167(-) A-I      intronic chr11:47755128(-) A-I      intronic chr11:47755114(-) A-I      intronic chr11:47755008(-) A-I      intronic chr11:47785858(-) A-I      intronic chr11:47769494(-) A-I      intronic chr11:47768921(-) A-I      intronic chr11:47785871(-) A-I      intronic chr11:47785923(-) A-I      intronic chr11:47754588(-) A-I      intronic chr11:47771985(-) A-I      intronic chr11:47762941(-) A-I      intronic chr11:47770330(-) A-I      intronic chr11:47762423(-) A-I      intronic chr11:47770395(-) A-I      intronic chr11:47754558(-) A-I      intronic chr11:47770418(-) A-I      intronic chr11:47770457(-) A-I      intronic chr11:47760622(-) A-I      intronic chr11:47772101(-) A-I      intronic chr11:47772103(-) A-I      intronic chr11:47758696(-) A-I      intronic chr11:47761439(-) A-I      intronic chr11:47769400(-) A-I      intronic chr11:47772113(-) A-I      intronic chr11:47772116(-) A-I      intronic chr11:47773368(-) A-I      intronic chr11:47773378(-) A-I      intronic chr11:47773388(-) A-I      intronic chr11:47773400(-) A-I      intronic chr11:47762379(-) A-I      intronic chr11:47762830(-) A-I      intronic chr11:47773423(-) A-I      intronic chr11:47754548(-) A-I      intronic chr11:47779113(-) A-I      intronic chr11:47773719(-) A-I      intronic chr11:47787283(-) A-I      intronic chr11:47779472(-) A-I      intronic chr11:47779824(-) A-I      intronic chr11:47780172(-) A-I      intronic chr11:47754531(-) A-I      intronic chr11:47780299(-) A-I      intronic chr11:47763286(-) A-I      intronic chr11:47754526(-) A-I      intronic chr11:47761619(-) A-I      intronic chr11:47759568(-) A-I      intronic chr11:47768939(-) A-I      intronic chr11:47761360(-) A-I      intronic chr11:47761428(-) A-I      intronic chr11:47763291(-) A-I      intronic chr11:47761565(-) A-I      intronic chr11:47744385(-) A-I      intronic chr11:47772023(-) A-I      intronic chr11:47744347(-) A-I      intronic chr11:47761351(-) A-I      intronic chr11:47780302(-) A-I      intronic chr11:47783745(-) A-I      intronic chr11:47780861(-) A-I      intronic chr11:47744346(-) A-I      intronic chr11:47744280(-) A-I      intronic chr11:47780935(-) A-I      intronic chr11:47763814(-) A-I      intronic chr11:47780941(-) A-I      intronic chr11:47780943(-) A-I      intronic chr11:47761801(-) A-I      intronic chr11:47770787(-) A-I      intronic chr11:47763944(-) A-I      intronic chr11:47770340(-) A-I      intronic chr11:47761555(-) A-I      intronic chr11:47764796(-) A-I      intronic chr11:47780147(-) A-I      intronic chr11:47784296(-) A-I      intronic chr11:47780954(-) A-I      intronic chr11:47764852(-) A-I      intronic chr11:47782926(-) A-I      intronic chr11:47782988(-) A-I      intronic chr11:47769538(-) A-I      intronic chr11:47764869(-) A-I      intronic chr11:47782996(-) A-I      intronic chr11:47744235(-) A-I      intronic chr11:47759171(-) A-I      intronic chr11:47769464(-) A-I      intronic chr11:47764923(-) A-I      intronic chr11:47783063(-) A-I      intronic chr11:47783067(-) A-I      intronic chr11:47783418(-) A-I      intronic chr11:47764320(-) A-I      intronic chr11:47783062(-) A-I      intronic chr11:47764940(-) A-I      intronic chr11:47744228(-) A-I      intronic chr11:47744211(-) A-I      intronic chr11:47755181(-) A-I      intronic chr11:47759130(-) A-I      intronic chr11:47783097(-) A-I      intronic chr11:47764953(-) A-I      intronic chr11:47780375(-) A-I      intronic chr11:47783213(-) A-I      intronic chr11:47764952(-) A-I      intronic chr11:47743873(-) A-I      intronic chr11:47785813(-) A-I      intronic chr11:47743861(-) A-I      intronic chr11:47743073(-) A-I      intronic chr11:47769101(-) A-I      intronic chr11:47782362(-) A-I      intronic chr11:47742715(-) A-I      intronic chr11:47762918(-) A-I      intronic chr11:47742709(-) A-I      intronic chr11:47761559(-) A-I      intronic chr11:47768760(-) A-I      intronic chr11:47769814(-) A-I      intronic chr11:47769613(-) A-I      intronic chr11:47742025(-) A-I      intronic chr11:47784247(-) A-I      intronic chr11:47760757(-) A-I      intronic chr11:47759161(-) A-I      intronic chr11:47741953(-) A-I      intronic chr11:47761819(-) A-I      intronic chr11:47741876(-) A-I      intronic chr11:47761722(-) A-I      intronic chr11:47761750(-) A-I      intronic chr11:47762273(-) A-I      intronic chr11:47779891(-) A-I      intronic chr11:47760696(-) A-I      intronic chr11:47762921(-) A-I      intronic chr11:47760609(-) A-I      intronic chr11:47764972(-) A-I      intronic chr11:47756041(-) A-I      intronic chr11:47761795(-) A-I      intronic chr11:47763801(-) A-I      intronic chr11:47761503(-) A-I      intronic chr11:47759475(-) A-I      intronic chr11:47762187(-) A-I      intronic chr11:47743142(-) A-I      intronic chr11:47762322(-) A-I      intronic chr11:47785115(-) A-I      intronic chr11:47782912(-) A-I      intronic chr11:47740607(-) A-I      intronic chr11:47761723(-) A-I      intronic chr11:47762702(-) A-I      intronic chr11:47759576(-) A-I      intronic chr11:47760711(-) A-I      intronic chr11:47783952(-) A-I      intronic chr11:47783219(-) A-I      intronic chr11:47758514(-) A-I      intronic chr11:47770642(-) A-I      intronic chr11:47784230(-) A-I      intronic chr11:47740712(-) A-I      intronic chr11:47783406(-) A-I      intronic chr11:47780581(-) A-I      intronic chr11:47770593(-) A-I      intronic chr11:47782982(-) A-I      intronic chr11:47768917(-) A-I      intronic chr11:47782052(-) A-I      intronic chr11:47780377(-) A-I      intronic chr11:47781340(-) A-I      intronic chr11:47762228(-) A-I      intronic chr11:47759156(-) A-I      intronic chr11:47762751(-) A-I      intronic chr11:47779245(-) A-I      intronic chr11:47764872(-) A-I      intronic chr11:47781012(-) A-I      intronic chr11:47759024(-) A-I      intronic chr11:47768241(-) A-I      intronic chr11:47769708(-) A-I      intronic chr11:47758729(-) A-I      intronic chr11:47780027(-) A-I      intronic chr11:47787265(-) A-I      intronic chr11:47755165(-) A-I      intronic chr11:47760763(-) A-I      intronic chr11:47785247(-) A-I      intronic chr11:47761495(-) A-I      intronic chr11:47765034(-) A-I      intronic chr11:47784362(-) A-I      intronic chr11:47772172(-) A-I      intronic chr11:47779956(-) A-I      intronic chr11:47762238(-) A-I      intronic chr11:47769722(-) A-I      intronic chr11:47784145(-) A-I      intronic chr11:47785298(-) A-I      intronic chr11:47782965(-) A-I      intronic chr11:47759084(-) A-I      intronic chr11:47762188(-) A-I      intronic chr11:47771010(-) A-I      intronic chr11:47761872(-) A-I      intronic chr11:47780359(-) A-I      intronic chr11:47762862(-) A-I      intronic chr11:47770417(-) A-I      intronic chr11:47755132(-) A-I      intronic chr11:47770792(-) A-I      intronic chr11:47763826(-) A-I      intronic chr11:47780636(-) A-I      intronic chr11:47768881(-) A-I      intronic chr11:47761359(-) A-I      intronic chr11:47760325(-) A-I      intronic chr11:47751103(-) A-I      intronic chr11:47761224(-) A-I      intronic chr11:47762347(-) A-I      intronic chr11:47785915(-) A-I      intronic chr11:47758680(-) A-I      intronic chr11:47763827(-) A-I      intronic chr11:47762538(-) A-I      intronic chr11:47742941(-) A-I      intronic chr11:47743835(-) A-I      intronic chr11:47762971(-) A-I      intronic chr11:47781461(-) A-I      intronic chr11:47769062(-) A-I      intronic chr11:47782995(-) A-I      intronic chr11:47768204(-) A-I      intronic chr11:47784647(-) A-I      intronic chr11:47762776(-) A-I      intronic chr11:47769232(-) A-I      intronic chr11:47754413(-) A-I      intronic chr11:47761584(-) A-I      intronic chr11:47772178(-) A-I      intronic chr11:47770644(-) A-I      intronic chr11:47784771(-) A-I      intronic chr11:47758617(-) A-I      intronic chr11:47764935(-) A-I      intronic chr11:47761477(-) A-I      intronic chr11:47764996(-) A-I      intronic chr11:47769443(-) A-I      intronic chr11:47759474(-) A-I      intronic chr11:47759463(-) A-I      intronic chr11:47763135(-) A-I      intronic chr11:47743043(-) A-I      intronic chr11:47787337(-) A-I      intronic chr11:47759401(-) A-I      intronic chr11:47780944(-) A-I      intronic chr11:47760683(-) A-I      intronic chr11:47770726(-) A-I      intronic chr11:47761232(-) A-I      intronic chr11:47770594(-) A-I      intronic chr11:47762303(-) A-I      intronic chr11:47761769(-) A-I      intronic chr11:47758606(-) A-I      intronic chr11:47783860(-) A-I      intronic chr11:47762763(-) A-I      intronic chr11:47769608(-) A-I      intronic chr11:47784496(-) A-I      intronic chr11:47761845(-) A-I      intronic chr11:47760380(-) A-I      intronic chr11:47768258(-) A-I      intronic chr11:47761804(-) A-I      intronic chr11:47770817(-) A-I      intronic chr11:47784350(-) A-I      intronic chr11:47754631(-) A-I      intronic chr11:47763334(-) A-I      intronic chr11:47764959(-) A-I      intronic chr11:47770051(-) A-I      intronic chr11:47759374(-) A-I      intronic chr11:47741886(-) A-I      intronic chr11:47749701(-) A-I      intronic chr11:47744410(-) A-I      intronic chr11:47772052(-) A-I      intronic chr11:47758591(-) A-I      intronic chr11:47762889(-) A-I      intronic chr11:47775745(-) A-I      intronic chr11:47744415(-) A-I      intronic chr11:47761545(-) A-I      intronic chr11:47771046(-) A-I      intronic chr11:47782925(-) A-I      intronic chr11:47768342(-) A-I      intronic chr11:47762248(-) A-I      intronic chr11:47762819(-) A-I      intronic chr11:47759948(-) A-I      intronic chr11:47784282(-) A-I      intronic chr11:47759936(-) A-I      intronic chr11:47761920(-) A-I      intronic chr11:47761950(-) A-I      intronic chr11:47759165(-) A-I      intronic chr11:47769728(-) A-I      intronic chr11:47771011(-) A-I      intronic chr11:47770878(-) A-I      intronic chr11:47758660(-) A-I      intronic chr11:47759195(-) A-I      intronic chr11:47744239(-) A-I      intronic chr11:47763316(-) A-I      intronic chr11:47780945(-) A-I      intronic chr11:47784682(-) A-I      intronic chr11:47760041(-) A-I      intronic chr11:47758563(-) A-I      intronic chr11:47762885(-) A-I      intronic chr11:47783781(-) A-I      intronic chr11:47740795(-) A-I      intronic chr11:47784299(-) A-I      intronic chr11:47760296(-) A-I      intronic chr11:47760494(-) A-I      intronic chr11:47759902(-) A-I      intronic chr11:47761810(-) A-I      intronic chr11:47759089(-) A-I      intronic chr11:47762953(-) A-I      intronic chr11:47769437(-) A-I      intronic chr11:47780325(-) A-I      intronic chr11:47783899(-) A-I      intronic chr11:47785319(-) A-I      intronic chr11:47787494(-) A-I      intronic chr11:47780249(-) A-I      intronic chr11:47768897(-) A-I      intronic chr11:47783622(-) A-I      intronic chr11:47782990(-) A-I      intronic chr11:47784354(-) A-I      intronic chr11:47768669(-) A-I      intronic chr11:47764913(-) A-I      intronic chr11:47780033(-) A-I      intronic chr11:47784772(-) A-I      intronic chr11:47787511(-) A-I      intronic chr11:47768819(-) A-I      intronic chr11:47760538(-) A-I      intronic chr11:47784853(-) A-I      intronic chr11:47779725(-) A-I      intronic chr11:47750211(-) A-I      intronic chr11:47781347(-) A-I      intronic chr11:47763268(-) A-I      intronic chr11:47740800(-) A-I      intronic chr11:47763285(-) A-I      intronic chr11:47742684(-) A-I      intronic chr11:47784340(-) A-I      intronic chr11:47781405(-) A-I      intronic chr11:47782168(-) A-I      intronic chr11:47764991(-) A-I      intronic chr11:47783951(-) A-I      intronic chr11:47762546(-) A-I      intronic chr11:47784902(-) A-I      intronic chr11:47769078(-) A-I      intronic chr11:47740798(-) A-I      intronic chr11:47784353(-) A-I      intronic chr11:47770607(-) A-I      intronic chr11:47756025(-) A-I      intronic chr11:47779114(-) A-I      intronic chr11:47775750(-) A-I      intronic chr11:47784208(-) A-I      intronic chr11:47768728(-) A-I      intronic chr11:47780942(-) A-I      intronic chr11:47770714(-) A-I      intronic chr11:47783905(-) A-I      intronic chr11:47768729(-) A-I      intronic chr11:47784635(-) A-I      intronic chr11:47761220(-) A-I      intronic chr11:47764911(-) A-I      intronic chr11:47759336(-) A-I      intronic chr11:47764196(-) A-I      intronic chr11:47769239(-) A-I      intronic chr11:47768336(-) A-I      intronic chr11:47744423(-) A-I      intronic chr11:47762724(-) A-I      intronic chr11:47783224(-) A-I      intronic chr11:47785861(-) A-I      intronic chr11:47784833(-) A-I      intronic chr11:47781337(-) A-I      intronic chr11:47781500(-) A-I      intronic chr11:47742044(-) A-I      intronic chr11:47760552(-) A-I      intronic chr11:47744424(-) A-I      intronic chr11:47759054(-) A-I      intronic chr11:47764248(-) A-I      intronic chr11:47761884(-) A-I      intronic chr11:47773783(-) A-I      intronic chr11:47770037(-) A-I      intronic chr11:47782152(-) A-I      intronic chr11:47765032(-) A-I      intronic chr11:47785191(-) A-I      intronic chr11:47783880(-) A-I      intronic chr11:47781422(-) A-I      intronic chr11:47763353(-) A-I      intronic chr11:47780215(-) A-I      intronic chr11:47759466(-) A-I      intronic chr11:47762371(-) A-I      intronic chr11:47762473(-) A-I      intronic chr11:47769376(-) A-I      intronic chr11:47781017(-) A-I      intronic chr11:47761881(-) A-I      intronic chr11:47784648(-) A-I      intronic chr11:47780939(-) A-I      intronic chr11:47761627(-) A-I      intronic chr11:47741864(-) A-I      intronic chr11:47769055(-) A-I      intronic chr11:47760354(-) A-I      intronic chr11:47764949(-) A-I      intronic chr11:47784096(-) A-I      intronic chr11:47768689(-) A-I      intronic chr11:47741998(-) A-I      intronic chr11:47769691(-) A-I      intronic chr11:47763862(-) A-I      intronic chr11:47783515(-) A-I      intronic chr11:47768231(-) A-I      intronic chr11:47764999(-) A-I      intronic chr11:47770287(-) A-I      intronic chr11:47785324(-) A-I      intronic chr11:47760536(-) A-I      intronic chr11:47760338(-) A-I      intronic chr11:47762549(-) A-I      intronic chr11:47742622(-) A-I      intronic chr11:47760116(-) A-I      intronic chr11:47768617(-) A-I      intronic chr11:47740864(-) A-I      intronic chr11:47772189(-) A-I      intronic chr11:47762860(-) A-I      intronic chr11:47761867(-) A-I      intronic chr11:47779836(-) A-I      intronic chr11:47758568(-) A-I      intronic chr11:47770779(-) A-I      intronic chr11:47762814(-) A-I      intronic chr11:47768942(-) A-I      intronic chr11:47780324(-) A-I      intronic chr11:47759950(-) A-I      intronic chr11:47769337(-) A-I      intronic chr11:47783081(-) A-I      intronic chr11:47779987(-) A-I      intronic chr11:47764183(-) A-I      intronic chr11:47762348(-) A-I      intronic chr11:47762846(-) A-I      intronic chr11:47769627(-) A-I      intronic chr11:47762752(-) A-I      intronic chr11:47780328(-) A-I      intronic chr11:47770466(-) A-I      intronic chr11:47742475(-) A-I      intronic chr11:47783639(-) A-I      intronic chr11:47780650(-) A-I      intronic chr11:47779249(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	FNBP4	chr11:47785324(-) A-I intron -    22327324 chr11:47785325(-) A-I intron -    22327324 chr11:47747959(-) T-A intron -    22484847 chr11:47747982(-) T-A intron -    22484847 chr11:47760763(-) A-G intron -    22484847 chr11:47761750(-) A-G intron -    22484847 chr11:47762814(-) A-G intron -    22484847 chr11:47763353(-) A-G intron -    22484847 chr11:47764248(-) A-G intron -    22484847 chr11:47783781(-) A-G intron -    22484847 chr11:47785324(-) A-G intron -    22484847 chr11:47785325(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	FNBP4	chr11:47738980-47738981(-) m6A CDS//exon       27773535 chr11:47741497-47741498(-) m6A CDS//exon       27773535//22575960 chr11:47741561-47741562(-) m6A CDS//exon       24981863//27773535//22575960 chr11:47741622-47741623(-) m6A CDS//exon       24981863//27773535//27371828 chr11:47744531-47744532(-) m6A CDS//exon//intron       24981863//27773535//27371828 chr11:47744550-47744551(-) m6A CDS//exon//intron       24981863//27773535//27371828 chr11:47744620-47744621(-) m6A CDS//exon//intron       24284625//24209618//24981863//27773535//27371828 chr11:47744740-47744741(-) m6A CDS//exon//intron       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22608085 chr11:47744817-47744818(-) m6A CDS//exon//intron       24284625//24981863//26404942//27773535//27371828//22608085 chr11:47744824-47744825(-) m6A CDS//exon//intron       24284625//24981863//26404942//27773535//27371828//22608085 chr11:47744843-47744844(-) m6A CDS//exon//intron       24284625//24981863//27773535//27371828//22608085 chr11:47746039-47746040(-) m6A CDS//exon       27773535 chr11:47746052-47746053(-) m6A CDS//exon       27773535 chr11:47746075-47746076(-) m6A CDS//exon       27773535 chr11:47746258-47746259(-) m6A CDS//exon       24284625//27773535 chr11:47746398-47746399(-) m6A exon//intron       27773535 chr11:47752934-47752935(-) m6A CDS//exon       27773535 chr11:47752970-47752971(-) m6A CDS//exon       24981863//27773535 chr11:47752975-47752976(-) m6A CDS//exon       24981863//27773535 chr11:47752989-47752990(-) m6A CDS//exon       24981863//27773535 chr11:47753000-47753001(-) m6A CDS//exon       24981863//27773535 chr11:47753053-47753054(-) Cm CDS//exon       - chr11:47753082-47753083(-) m6A CDS//exon       27773535 chr11:47753408-47753409(-) m6A exon//intron       27773535 chr11:47753415-47753416(-) m6A exon//intron       27773535 chr11:47753482-47753483(-) m6A exon//intron       27773535 chr11:47753693-47753694(-) m6A exon//intron       22608085 chr11:47753721-47753722(-) m6A exon//intron       22608085 chr11:47753769-47753770(-) m6A exon//intron       22608085 chr11:47753859-47753860(-) m6A exon//intron       24981863//22608085 chr11:47753912-47753913(-) m6A exon//intron       24284625//24981863//27773535 chr11:47753992-47753993(-) m6A exon//intron       24284625//24981863//27773535//27371828//22608085 chr11:47754041-47754042(-) m6A exon//intron       24284625//24981863//27773535//27371828//22608085 chr11:47754091-47754092(-) m6A CDS//exon       24284625//24981863//27773535//27371828//22608085 chr11:47754138-47754139(-) m6A CDS//exon       24284625//24981863//27773535//27371828//22608085 chr11:47754147-47754148(-) m6A CDS//exon       24284625//24981863//27773535//27371828//22608085 chr11:47754165-47754166(-) m6A CDS//exon       24284625//27773535//27371828 chr11:47754181-47754182(-) m6A CDS//exon       24284625//27773535//27371828 chr11:47754208-47754209(-) m6A CDS//exon       27773535 chr11:47755581-47755582(-) m6A CDS//exon       27773535 chr11:47755618-47755619(-) m6A CDS//exon       27773535 chr11:47755666-47755667(-) m6A CDS//exon       27773535 chr11:47758179-47758180(-) m6A CDS//exon       24981863//27773535 chr11:47758202-47758203(-) m6A CDS//exon       24981863//27773535 chr11:47758244-47758245(-) Gm CDS//exon       - chr11:47765416-47765417(-) m6A exon//intron       28052920//27773535 chr11:47765449-47765450(-) m6A exon//intron       27773535 chr11:47765482-47765483(-) m6A exon//intron       27773535 chr11:47765507-47765508(-) m6A CDS//exon       27773535 chr11:47765537-47765538(-) m6A CDS//exon       27773535 chr11:47767634-47767635(-) m6A CDS//exon       24981863//28052920//27773535//22608085 chr11:47767649-47767650(-) m6A CDS//exon       24981863//28052920//27773535//22608085 chr11:47767663-47767664(-) Gm CDS//exon       - chr11:47767710-47767711(-) m6A CDS//exon       24981863//28052920//27773535//22608085 chr11:47767722-47767723(-) m6A CDS//exon       24981863//28052920//27773535//22608085 chr11:47767761-47767762(-) m1A CDS//exon       26863196 chr11:47767780-47767781(-) m6A CDS//exon       24981863//28052920//27773535//22608085 chr11:47767842-47767843(-) m1A CDS//exon       26863196 chr11:47772497-47772498(-) m6A CDS//exon       27773535 chr11:47772546-47772547(-) m6A CDS//exon       27773535 chr11:47772568-47772569(-) m6A CDS//exon       27773535 chr11:47772767-47772768(-) m6A CDS//exon       27773535 chr11:47772799-47772800(-) m6A CDS//exon       27773535 chr11:47774281-47774282(-) m6A exon//intron       27773535 chr11:47776122-47776123(-) m6A CDS//exon//intron       27773535 chr11:47776132-47776133(-) m6A CDS//exon//intron       27773535 chr11:47776151-47776152(-) m6A CDS//exon//intron       27773535 chr11:47786843-47786844(-) m6A CDS//exon//intron       27773535 chr11:47786861-47786862(-) m6A CDS//exon//intron       27773535 chr11:47786909-47786910(-) m6A CDS//exon//intron       27773536 chr11:47788721-47788722(-) m6A CDS//exon       27371828//27773536 chr11:47788738-47788739(-) m6A CDS//exon       27371828//27773536 chr11:47788751-47788752(-) m6A CDS//exon       27371828//27773536 chr11:47788830-47788831(-) m1A CDS//exon       26863196//26863410

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	FNBP4	Chromatin K562 cells     - Cytosol HCC cell line (HepG2)     - Exosome Blood     - Membrane HCC cell line (HepG2)     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus Colon cancer cells     24393600 Nucleus HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART9-5p
Interactor2: FNBP4

Evidence Support:

Weak-Evidence	PAR-CLIP
Prediction-Evidence	miRanda//PARalyzer//Targetscan
Support Database	ViRBase//VIRmiRNA//VmiReg

References:

PMID	22100165	Target region	3'UTR
Source	ViRBase//VIRmiRNA//VmiReg	Interactor1 expression	None
Tissue or cell line	BC-1 cells	Interactor2 expression	Downregulation
Description	Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites.Clusters with seed matches to expressed miRNAs were considered candidate target sites. Of the clusters mapping to human 3'UTRs, 69% (BC-1) and 70% (BC-3) had seed matches to expressed miRNAs (Tables S6).Table S6A BC-1 derived 3'UTR clusters with seed matches to expressed miRNAs.