Basic Information:

  VIRBase ID:  

VHID00397566

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART9-5p:  MIMAT0004816          VPS26A:  NM_001318945     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART9-5p	VPS26A
miRBase Accession/Entrez ID	MIMAT0004816	9559
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	HB58//Hbeta58//PEP8A//VPS26

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	VPS26A	chr10:70911158(+) A-I      intronic chr10:70913082(+) A-I      intronic chr10:70911153(+) A-I      intronic chr10:70913075(+) A-I      intronic chr10:70911163(+) A-I      intronic chr10:70913066(+) A-I      intronic chr10:70913045(+) A-I      intronic chr10:70913041(+) A-I      intronic chr10:70911169(+) A-I      intronic chr10:70913040(+) A-I      intronic chr10:70914554(+) A-I      intronic chr10:70910843(+) A-I      intronic chr10:70914546(+) A-I      intronic chr10:70914541(+) A-I      intronic chr10:70913517(+) A-I      intronic chr10:70913306(+) A-I      intronic chr10:70913215(+) A-I      intronic chr10:70886203(+) A-I      intronic chr10:70913080(+) A-I      intronic chr10:70912980(+) A-I      intronic chr10:70912935(+) A-I      intronic chr10:70912931(+) A-I      intronic chr10:70912840(+) A-I      intronic chr10:70912579(+) A-I      intronic chr10:70912562(+) A-I      intronic chr10:70912538(+) A-I      intronic chr10:70912476(+) A-I      intronic chr10:70911952(+) A-I      intronic chr10:70910864(+) A-I      intronic chr10:70910859(+) A-I      intronic chr10:70910239(+) A-I      intronic chr10:70909922(+) A-I      intronic chr10:70909572(+) A-I      intronic chr10:70909564(+) A-I      intronic chr10:70908786(+) A-I      intronic chr10:70908605(+) A-I      intronic chr10:70908592(+) A-I      intronic chr10:70908543(+) A-I      intronic chr10:70907569(+) A-I      intronic chr10:70903688(+) A-I      intronic chr10:70903618(+) A-I      intronic chr10:70921080(+) A-I      intronic chr10:70903496(+) A-I      intronic chr10:70913316(+) A-I      intronic chr10:70896604(+) A-I      intronic chr10:70894571(+) A-I      intronic chr10:70893665(+) A-I      intronic chr10:70893664(+) A-I      intronic chr10:70893652(+) A-I      intronic chr10:70891023(+) A-I      intronic chr10:70889464(+) A-I      intronic chr10:70889446(+) A-I      intronic chr10:70888774(+) A-I      intronic chr10:70920838(+) A-I      intronic chr10:70919016(+) A-I      intronic chr10:70913201(+) A-I      intronic chr10:70908616(+) A-I      intronic chr10:70912471(+) A-I      intronic chr10:70912470(+) A-I      intronic chr10:70914540(+) A-I      intronic chr10:70913068(+) A-I      intronic chr10:70893657(+) A-I      intronic chr10:70909360(+) A-I      intronic chr10:70925582(+) A-I      intronic chr10:70894663(+) A-I      intronic chr10:70914832(+) A-I      intronic chr10:70913044(+) A-I      intronic chr10:70907608(+) A-I      intronic chr10:70888688(+) A-I      intronic chr10:70910012(+) A-I      intronic chr10:70925647(+) A-I      intronic chr10:70925437(+) A-I      intronic chr10:70925392(+) A-I      intronic chr10:70925361(+) A-I      intronic chr10:70923115(+) A-I      intronic chr10:70923111(+) A-I      intronic chr10:70923110(+) A-I      intronic chr10:70921922(+) A-I      intronic chr10:70919017(+) A-I      intronic chr10:70918876(+) A-I      intronic chr10:70918875(+) A-I      intronic chr10:70914602(+) A-I      intronic chr10:70912951(+) A-I      intronic chr10:70894648(+) A-I      intronic chr10:70925307(+) A-I      intronic chr10:70911822(+) A-I      intronic chr10:70912654(+) A-I      intronic chr10:70894634(+) A-I      intronic chr10:70910760(+) A-I      intronic chr10:70924918(+) A-I      intronic chr10:70914475(+) A-I      intronic chr10:70908641(+) A-I      intronic chr10:70909910(+) A-I      intronic chr10:70908719(+) A-I      intronic chr10:70925505(+) A-I      intronic chr10:70909840(+) A-I      intronic chr10:70893459(+) A-I      intronic chr10:70925476(+) A-I      intronic chr10:70925694(+) A-I      intronic chr10:70912619(+) A-I      intronic chr10:70914275(+) A-I      intronic chr10:70911861(+) A-I      intronic chr10:70914850(+) A-I      intronic chr10:70925621(+) A-I      intronic chr10:70909355(+) A-I      intronic chr10:70911885(+) A-I      intronic chr10:70911059(+) A-I      intronic chr10:70910211(+) A-I      intronic chr10:70913124(+) A-I      intronic chr10:70920949(+) A-I      intronic chr10:70887636(+) A-I      intronic chr10:70911880(+) A-I      intronic chr10:70911953(+) A-I      intronic chr10:70925591(+) A-I      intronic chr10:70912986(+) A-I      intronic chr10:70903572(+) A-I      intronic chr10:70925622(+) A-I      intronic chr10:70910844(+) A-I      intronic chr10:70911850(+) A-I      intronic chr10:70891471(+) A-I      intronic chr10:70914132(+) A-I      intronic chr10:70925362(+) A-I      intronic chr10:70912906(+) A-I      intronic chr10:70920955(+) A-I      intronic chr10:70911165(+) A-I      intronic chr10:70920839(+) A-I      intronic chr10:70914437(+) A-I      intronic chr10:70895244(+) A-I      intronic chr10:70895290(+) A-I      intronic chr10:70914137(+) A-I      intronic chr10:70888685(+) A-I      intronic chr10:70925611(+) A-I      intronic chr10:70912932(+) A-I      intronic chr10:70908764(+) A-I      intronic chr10:70888171(+) A-I      intronic chr10:70910064(+) A-I      intronic chr10:70918990(+) A-I      intronic chr10:70912945(+) A-I      intronic chr10:70929083(+) A-I      intronic chr10:70894607(+) A-I      intronic chr10:70921793(+) A-I      intronic chr10:70909351(+) A-I      intronic chr10:70908581(+) A-I      intronic chr10:70913067(+) A-I      intronic chr10:70894572(+) A-I      intronic chr10:70921890(+) A-I      intronic chr10:70893705(+) A-I      intronic chr10:70913308(+) A-I      intronic chr10:70910258(+) A-I      intronic chr10:70907742(+) A-I      intronic chr10:70910766(+) A-I      intronic chr10:70893555(+) A-I      intronic chr10:70921792(+) A-I      intronic chr10:70925432(+) A-I      intronic chr10:70911844(+) A-I      intronic chr10:70925357(+) A-I      intronic chr10:70914172(+) A-I      intronic chr10:70911845(+) A-I      intronic chr10:70913164(+) A-I      intronic chr10:70912905(+) A-I      intronic chr10:70911818(+) A-I      intronic chr10:70912547(+) A-I      intronic chr10:70925330(+) A-I      intronic chr10:70921083(+) A-I      intronic chr10:70911949(+) A-I      intronic chr10:70912989(+) A-I      intronic chr10:70913169(+) A-I      intronic chr10:70914834(+) A-I      intronic chr10:70905955(+) A-I      intronic chr10:70914772(+) A-I      intronic chr10:70894653(+) A-I      intronic chr10:70913371(+) A-I      intronic chr10:70921931(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	VPS26A	chr10:70911844(+) A-G intron -    22484847 chr10:70914132(+) A-G intron -    22484847 chr10:70914137(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	VPS26A	chr10:70883439-70883440(+) m6A 5'UTR       25456834//24981863 chr10:70883445-70883446(+) m6A 5'UTR       25456834//24981863 chr10:70883467-70883468(+) m6A 5'UTR       25456834//24981863 chr10:70883575-70883576(+) m6A 5'UTR       25456834//24981863 chr10:70883639-70883640(+) m6A 5'UTR       25456834 chr10:70883655-70883656(+) m6A 5'UTR       25456834 chr10:70883678-70883679(+) m6A 5'UTR       25456834 chr10:70883685-70883686(+) m6A 5'UTR       25456834 chr10:70883730-70883731(+) m6A 5'UTR       - chr10:70892716-70892717(+) m6A 5'UTR//CDS//exon//intron       24209618//24981863//27773535 chr10:70892740-70892741(+) m6A CDS//exon//intron       24209618//24981863//27773535 chr10:70892763-70892764(+) m6A CDS//exon//intron       27773535 chr10:70893301-70893302(+) m6A intron       27773535 chr10:70925817-70925818(+) m6A 3'UTR//CDS//exon       24981863 chr10:70925823-70925824(+) m6A 3'UTR//CDS//exon       24981863 chr10:70928310-70928311(+) m6A CDS//exon//intron       24981863 chr10:70928364-70928365(+) m6A CDS//exon//intron       24981863//26404942//27773535 chr10:70928380-70928381(+) m6A CDS//exon//intron       24981863//27773535 chr10:70929800-70929801(+) m6A exon//intron       24981863//27773535 chr10:70929879-70929880(+) m6A exon//intron       27773535//22608085 chr10:70929893-70929894(+) m6A exon//intron       22608085 chr10:70930943-70930944(+) m6A 3'UTR//CDS//exon       24284625//24981863//22608085 chr10:70930952-70930953(+) m6A 3'UTR//CDS//exon       24284625//24981863//27773535//22608085 chr10:70930959-70930960(+) m6A 3'UTR//CDS//exon       24284625//24981863//27773535//22608085 chr10:70931009-70931010(+) m6A 3'UTR//CDS//exon       24284625//24981863//27773535//22608085 chr10:70931025-70931026(+) m6A 3'UTR//exon       24284625//24981863//27773535//22608085 chr10:70931030-70931031(+) m6A 3'UTR//exon       24284625//24981863//27773535//22608085 chr10:70931056-70931057(+) m6A 3'UTR       24284625//24981863//27773535//22608085 chr10:70931130-70931131(+) m6A 3'UTR       22608085 chr10:70932550-70932551(+) m6A 3'UTR       27773535 chr10:70932610-70932611(+) m6A 3'UTR       27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	VPS26A	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)     - Ribosome HEK-293 cells     22199352 Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART9-5p
Interactor2: VPS26A

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg