Detail Information

Basic Information:


  VIRBase ID:  

VHID00397085

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART9-5p:           FLOT2:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART9-5p FLOT2
miRBase
Accession/Entrez ID		 MIMAT0004816 2319
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - ECS-1//ECS1//ESA//ESA1//M17S1

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR FLOT2
chr17:27219862(-) A-I      intronic
chr17:27212166(-) A-I      intronic
chr17:27221356(-) A-I      intronic
chr17:27219472(-) A-I      intronic
chr17:27221549(-) A-I      intronic
chr17:27221288(-) A-I      intronic
chr17:27221485(-) A-I      intronic
chr17:27221398(-) A-I      intronic
chr17:27221412(-) A-I      intronic
chr17:27221424(-) A-I      intronic
chr17:27221498(-) A-I      intronic
chr17:27221533(-) A-I      intronic
chr17:27221793(-) A-I      intronic
chr17:27222027(-) A-I      intronic
chr17:27221155(-) A-I      intronic
chr17:27221300(-) A-I      intronic
chr17:27222181(-) A-I      intronic
chr17:27221520(-) A-I      intronic
chr17:27218081(-) A-I      intronic
chr17:27218126(-) A-I      intronic
chr17:27219775(-) A-I      intronic
chr17:27219851(-) A-I      intronic
chr17:27221242(-) A-I      intronic
chr17:27221262(-) A-I      intronic
chr17:27221152(-) A-I      intronic
chr17:27221566(-) A-I      intronic
chr17:27221270(-) A-I      intronic
chr17:27221487(-) A-I      intronic
chr17:27222022(-) A-I      intronic
chr17:27221771(-) A-I      intronic
chr17:27221736(-) A-I      intronic
chr17:27222126(-) A-I      intronic
chr17:27222015(-) A-I      intronic
chr17:27221376(-) A-I      intronic
chr17:27221768(-) A-I      intronic
chr17:27221260(-) A-I      intronic
chr17:27222127(-) A-I      intronic
chr17:27221437(-) A-I      intronic
chr17:27221512(-) A-I      intronic
chr17:27221439(-) A-I      intronic
chr17:27221333(-) A-I      intronic
chr17:27219863(-) A-I      intronic
chr17:27221476(-) A-I      intronic
chr17:27221940(-) A-I      intronic
chr17:27221287(-) A-I      intronic
chr17:27221542(-) A-I      intronic
chr17:27219857(-) A-I      intronic
chr17:27221812(-) A-I      intronic
chr17:27221261(-) A-I      intronic
chr17:27218019(-) A-I      intronic
chr17:27219771(-) A-I      intronic
chr17:27221997(-) A-I      intronic
chr17:27221534(-) A-I      intronic
chr17:27217990(-) A-I      intronic
chr17:27219911(-) A-I      intronic
chr17:27219630(-) A-I      intronic
chr17:27221369(-) A-I      intronic
chr17:27221339(-) A-I      intronic
chr17:27219915(-) A-I      intronic
chr17:27222177(-) A-I      intronic
chr17:27221560(-) A-I      intronic
chr17:27222168(-) A-I      intronic
chr17:27219837(-) A-I      intronic
chr17:27222529(-) A-I      intronic
chr17:27221730(-) A-I      intronic
chr17:27221725(-) A-I      intronic
chr17:27221598(-) A-I      intronic
chr17:27221385(-) A-I      intronic
chr17:27221479(-) A-I      intronic
chr17:27221161(-) A-I      intronic
chr17:27219559(-) A-I      intronic
chr17:27222531(-) A-I      intronic
chr17:27221248(-) A-I      intronic
chr17:27221493(-) A-I      intronic
chr17:27222204(-) A-I      intronic
chr17:27222058(-) A-I      intronic
chr17:27221450(-) A-I      intronic
chr17:27219806(-) A-I      intronic
chr17:27219751(-) A-I      intronic
chr17:27221559(-) A-I      intronic
chr17:27222553(-) A-I      intronic
chr17:27221470(-) A-I      intronic
chr17:27222434(-) A-I      intronic
chr17:27218015(-) A-I      intronic
chr17:27221302(-) A-I      intronic
chr17:27221301(-) A-I      intronic
chr17:27221160(-) A-I      intronic
chr17:27222457(-) A-I      intronic
chr17:27221494(-) A-I      intronic
chr17:27218027(-) A-I      intronic
chr17:27221147(-) A-I      intronic
chr17:27221729(-) A-I      intronic
chr17:27222554(-) A-I      intronic
chr17:27221313(-) A-I      intronic
chr17:27218172(-) A-I      intronic
chr17:27221998(-) A-I      intronic
chr17:27221425(-) A-I      intronic
chr17:27221251(-) A-I      intronic
chr17:27221397(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED FLOT2
chr17:27221437(-) A-I intron -    22028664
chr17:27221439(-) A-I intron -    22028664
chr17:27221450(-) A-I intron -    22028664
chr17:27221476(-) A-I intron -    22028664
chr17:27221479(-) A-I intron -    22028664
chr17:27221487(-) A-I intron -    22028664
chr17:27221512(-) A-I intron -    22028664
chr17:27221534(-) A-I intron -    22028664
chr17:27221542(-) A-I intron -    22028664
chr17:27221559(-) A-I intron -    22028664
chr17:27221566(-) A-I intron -    22028664
chr17:27221598(-) A-I intron -    22028664
chr17:27219806(-) A-G intron -    22484847
chr17:27221147(-) A-G intron -    22484847
chr17:27221161(-) A-G intron -    22484847
chr17:27221771(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase FLOT2
chr17:27206369-27206370(-) m6A 3'UTR//exon       27773535
chr17:27207011-27207012(-) m6A 3'UTR//exon//intron       27773535
chr17:27207030-27207031(-) Y 3'UTR//exon//intron       25219674
chr17:27207090-27207091(-) m6A 3'UTR//exon//intron       27773535
chr17:27207465-27207466(-) m6A 3'UTR//exon//intron       27773535
chr17:27207507-27207508(-) m6A 3'UTR//exon//intron       27773535
chr17:27207740-27207741(-) m6A 3'UTR//CDS//exon//intron       27773535
chr17:27208909-27208910(-) m6A 3'UTR//CDS//exon//intron       24209618//27773535//27371828//22575960
chr17:27208947-27208948(-) m6A 3'UTR//CDS//exon//intron       24209618//24981863//27773535//27371828//22575960
chr17:27209001-27209002(-) m6A 3'UTR//CDS//exon//intron       24209618//24981863//26404942//27773535//27371828//22575960
chr17:27209208-27209209(-) m6A 3'UTR//CDS//exon//intron       24209618//27773535//27371828//22575960
chr17:27209419-27209420(-) m6A 3'UTR//CDS//exon//intron       24209618//27773535//22575960
chr17:27209448-27209449(-) m6A 3'UTR//CDS//exon//intron       27773535//22575960
chr17:27209672-27209673(-) m6A 3'UTR//CDS//exon       27773535//22575960
chr17:27209678-27209679(-) m6A 3'UTR//CDS//exon       27773535
chr17:27209706-27209707(-) m6A 3'UTR//CDS//exon       27773535
chr17:27209822-27209823(-) m6A exon//intron       27773535
chr17:27210144-27210145(-) m6A 3'UTR//CDS//exon//intron       22575960
chr17:27210155-27210156(-) m6A 3'UTR//CDS//exon//intron       22575960
chr17:27210178-27210179(-) m6A 3'UTR//CDS//exon//intron       22575960
chr17:27210225-27210226(-) m6A CDS//exon//intron       27773535//22575960

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate FLOT2
Chromatin K562 cells     -
Cytosol K562 cells     -
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Membrane K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART9-5p
Interactor2: FLOT2

Evidence Support:


Prediction-Evidence miRanda//Targetscan
Support Database VmiReg

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