Basic Information:

  VIRBase ID:  

VHID00396977

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.6040

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART9-5p:  MIMAT0004816          CASP7:  NM_001320911     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART9-5p	CASP7
miRBase Accession/Entrez ID	MIMAT0004816	840
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	CASP-7//CMH-1//ICE-LAP3//LICE2//MCH3

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	CASP7	chr10:115482552(+) A-I      intronic chr10:115475392(+) A-I      intronic chr10:115482563(+) A-I      intronic chr10:115482556(+) A-I      intronic chr10:115461170(+) A-I      intronic chr10:115477103(+) A-I      intronic chr10:115475308(+) A-I      intronic chr10:115475331(+) A-I      intronic chr10:115477195(+) A-I      intronic chr10:115477175(+) A-I      intronic chr10:115458250(+) A-I      intronic chr10:115458309(+) A-I      intronic chr10:115477102(+) A-I      intronic chr10:115461261(+) A-I      intronic chr10:115474283(+) A-I      intronic chr10:115482506(+) A-I      intronic chr10:115458337(+) A-I      intronic chr10:115467702(+) A-I      intronic chr10:115474785(+) A-I      intronic chr10:115474248(+) A-I      intronic chr10:115474278(+) A-I      intronic chr10:115474837(+) A-I      intronic chr10:115482441(+) A-I      intronic chr10:115467604(+) A-I      intronic chr10:115458252(+) A-I      intronic chr10:115474312(+) A-I      intronic chr10:115461256(+) A-I      intronic chr10:115458301(+) A-I      intronic chr10:115458227(+) A-I      intronic chr10:115477181(+) A-I      intronic chr10:115474798(+) A-I      intronic chr10:115458258(+) A-I      intronic chr10:115477035(+) A-I      intronic chr10:115483337(+) A-I      intronic chr10:115467614(+) A-I      intronic chr10:115475478(+) A-I      intronic chr10:115475444(+) A-I      intronic chr10:115458251(+) A-I      intronic chr10:115482525(+) A-I      intronic chr10:115467696(+) A-I      intronic chr10:115461272(+) A-I      intronic chr10:115482503(+) A-I      intronic chr10:115461163(+) A-I      intronic chr10:115477182(+) A-I      intronic chr10:115475295(+) A-I      intronic chr10:115483418(+) A-I      intronic chr10:115481697(+) A-I      intronic chr10:115482481(+) A-I      intronic chr10:115482494(+) A-I      intronic chr10:115481712(+) A-I      intronic chr10:115458176(+) A-I      intronic chr10:115477028(+) A-I      intronic chr10:115458292(+) A-I      intronic chr10:115457719(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	CASP7	chr10:115458438(+) A-T intron -    22484847 chr10:115458441(+) A-T intron -    22484847 chr10:115458176(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CASP7	chr10:115439061-115439062(+) m6A 5'UTR       24981863 chr10:115439638-115439639(+) m6A 5'UTR//CDS//intron       24981863 chr10:115439672-115439673(+) m6A 5'UTR//CDS//intron       24981863 chr10:115439699-115439700(+) m6A 5'UTR//CDS//intron       24981863 chr10:115451734-115451735(+) m6A 5'UTR//CDS//intron       24981863 chr10:115451779-115451780(+) m6A 5'UTR//CDS//intron       24981863 chr10:115457331-115457332(+) m6A CDS       24981863 chr10:115469132-115469133(+) m6A 5'UTR//intron       - chr10:115480900-115480901(+) m6A CDS//exon       26404942 chr10:115480909-115480910(+) m6A CDS//exon       26404942 chr10:115489150-115489151(+) m6A CDS//exon       24981863 chr10:115489280-115489281(+) m6A 3'UTR//CDS       24981863 chr10:115489563-115489564(+) m6A 3'UTR       24981863 chr10:115489857-115489858(+) m6A 3'UTR       27773535 chr10:115489863-115489864(+) m6A 3'UTR       27773535 chr10:115489937-115489938(+) m6A 3'UTR       24209618//24981863//26404942//27773535//22608085 chr10:115490033-115490034(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22608085 chr10:115490065-115490066(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22608085 chr10:115490103-115490104(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr10:115490136-115490137(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr10:115490232-115490233(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr10:115490250-115490251(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22608085 chr10:115490269-115490270(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22608085 chr10:115490304-115490305(+) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22608085 chr10:115490387-115490388(+) m6A 3'UTR       26404942//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	CASP7	Chromatin K562 cells     - Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleus HeLa-S3 cells     - Ribosome HEK-293 cells     22199352 Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART9-5p
Interactor2: CASP7

Evidence Support:

Weak-Evidence	PAR-CLIP
Prediction-Evidence	miRanda//PARalyzer//PITA//Targetscan
Support Database	ViRBase//VIRmiRNA//VmiReg

References:

PMID	22100165	Target region	3'UTR
Source	ViRBase//VIRmiRNA//VmiReg	Interactor1 expression	None
Tissue or cell line	BC-1 cells	Interactor2 expression	Downregulation
Description	Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites.Clusters with seed matches to expressed miRNAs were considered candidate target sites. Of the clusters mapping to human 3'UTRs, 69% (BC-1) and 70% (BC-3) had seed matches to expressed miRNAs (Tables S6).Table S6A BC-1 derived 3'UTR clusters with seed matches to expressed miRNAs.