Detail Information

Basic Information:


  VIRBase ID:  

VHID00396283

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART7-5p:           IFT22:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART7-5p IFT22
miRBase
Accession/Entrez ID		 MIMAT0004815 64792
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - FAP9//RABL5

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR IFT22
chr7:100959963(-) A-I      intronic
chr7:100961718(-) A-I      intronic
chr7:100961757(-) A-I      intronic
chr7:100962093(-) A-I      intronic
chr7:100963090(-) A-I      intronic
chr7:100962096(-) A-I      intronic
chr7:100962050(-) A-I      intronic
chr7:100962088(-) A-I      intronic
chr7:100962082(-) A-I      intronic
chr7:100957715(-) A-I      3'UTR
chr7:100957665(-) A-I      3'UTR
chr7:100957709(-) A-I      3'UTR
chr7:100957357(-) A-I      3'UTR
chr7:100957602(-) A-I      3'UTR
chr7:100957223(-) A-I      3'UTR
chr7:100957301(-) A-I      3'UTR
chr7:100957614(-) A-I      3'UTR
chr7:100957388(-) A-I      3'UTR
chr7:100961657(-) A-I      intronic
chr7:100963311(-) A-I      intronic
chr7:100962032(-) A-I      intronic
chr7:100961629(-) A-I      intronic
chr7:100962095(-) A-I      intronic
chr7:100961185(-) A-I      intronic
chr7:100963265(-) A-I      intronic
chr7:100961738(-) A-I      intronic
chr7:100961583(-) A-I      intronic
chr7:100961689(-) A-I      intronic
chr7:100956846(-) A-I      3'UTR
chr7:100957645(-) A-I      3'UTR
chr7:100957616(-) A-I      3'UTR
chr7:100956684(-) A-I      3'UTR
chr7:100957620(-) A-I      3'UTR
chr7:100957687(-) A-I      3'UTR
chr7:100957326(-) A-I      3'UTR
chr7:100957262(-) A-I      3'UTR
chr7:100957576(-) A-I      3'UTR
chr7:100957686(-) A-I      3'UTR
chr7:100957365(-) A-I      3'UTR
chr7:100957566(-) A-I      3'UTR
chr7:100956884(-) A-I      3'UTR
chr7:100956793(-) A-I      3'UTR
chr7:100956738(-) A-I      3'UTR
chr7:100957384(-) A-I      3'UTR
chr7:100957332(-) A-I      3'UTR
chr7:100957333(-) A-I      3'UTR
chr7:100957286(-) A-I      3'UTR
chr7:100956885(-) A-I      3'UTR
chr7:100956742(-) A-I      3'UTR
chr7:100957313(-) A-I      3'UTR
chr7:100957615(-) A-I      3'UTR
chr7:100957205(-) A-I      3'UTR
chr7:100956796(-) A-I      3'UTR
chr7:100957334(-) A-I      3'UTR
chr7:100957276(-) A-I      3'UTR
chr7:100957575(-) A-I      3'UTR
chr7:100956862(-) A-I      3'UTR
chr7:100962010(-) A-I      intronic
chr7:100961644(-) A-I      intronic
chr7:100962116(-) A-I      intronic
chr7:100962166(-) A-I      intronic
chr7:100962056(-) A-I      intronic
chr7:100962094(-) A-I      intronic
chr7:100961638(-) A-I      intronic
chr7:100961701(-) A-I      intronic
chr7:100961986(-) A-I      intronic
chr7:100959961(-) A-I      intronic
chr7:100962066(-) A-I      intronic
chr7:100961669(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase IFT22
chr7:100957806-100957807(-) m6A 3'UTR       24981863
chr7:100957890-100957891(-) m6A 3'UTR       24981863//27773535
chr7:100957925-100957926(-) m6A 3'UTR       24981863//27773535
chr7:100957948-100957949(-) m6A 3'UTR       24981863//27773535//22608085
chr7:100957966-100957967(-) m6A 3'UTR       24981863//27773535//22608085
chr7:100958115-100958116(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//22608085
chr7:100958126-100958127(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//22608085
chr7:100958171-100958172(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//22608085
chr7:100958182-100958183(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22608085
chr7:100958252-100958253(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr7:100958397-100958398(-) m6A 3'UTR//exon       24284625//24209618//24981863//22575960//22608085
chr7:100958442-100958443(-) m6A 3'UTR//CDS//exon       24284625//24209618//24981863
chr7:100958526-100958527(-) m6A 3'UTR//CDS//exon       24284625

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate IFT22
Exosome Blood     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART7-5p
Interactor2: IFT22

Evidence Support:


Prediction-Evidence miRanda//Targetscan
Support Database VmiReg

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