Basic Information:

  VIRBase ID:  

VHID00395440

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART7-5p:  MIMAT0004815          SRC:  NM_005417     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART7-5p	SRC
miRBase Accession/Entrez ID	MIMAT0004815	6714
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	ASV//c-SRC//p60-Src//SRC1//THC6

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SRC	chr20:36006640(+) A-I      intronic chr20:36007821(+) A-I      intronic chr20:36008454(+) A-I      intronic chr20:36008465(+) A-I      intronic chr20:36018989(+) A-I      intronic chr20:36008491(+) A-I      intronic chr20:36018938(+) A-I      intronic chr20:36008007(+) A-I      intronic chr20:36018974(+) A-I      intronic chr20:36008039(+) A-I      intronic chr20:35995556(+) A-I      intronic chr20:36017004(+) A-I      intronic chr20:36020096(+) A-I      intronic chr20:36020118(+) A-I      intronic chr20:35995577(+) A-I      intronic chr20:35995579(+) A-I      intronic chr20:35996678(+) A-I      intronic chr20:35995555(+) A-I      intronic chr20:36008264(+) A-I      intronic chr20:35995550(+) A-I      intronic chr20:36008016(+) A-I      intronic chr20:36007936(+) A-I      intronic chr20:36008020(+) A-I      intronic chr20:36008033(+) A-I      intronic chr20:36007931(+) A-I      intronic chr20:36003735(+) A-I      intronic chr20:36002616(+) A-I      intronic chr20:36002547(+) A-I      intronic chr20:36002544(+) A-I      intronic chr20:35998965(+) A-I      intronic chr20:35998923(+) A-I      intronic chr20:35998851(+) A-I      intronic chr20:36008205(+) A-I      intronic chr20:35998242(+) A-I      intronic chr20:35996727(+) A-I      intronic chr20:35996694(+) A-I      intronic chr20:36008006(+) A-I      intronic chr20:36008048(+) A-I      intronic chr20:36006678(+) A-I      intronic chr20:36018948(+) A-I      intronic chr20:36020209(+) A-I      intronic chr20:36020101(+) A-I      intronic chr20:36018881(+) A-I      intronic chr20:35998282(+) A-I      intronic chr20:35996749(+) A-I      intronic chr20:36016872(+) A-I      intronic chr20:35995524(+) A-I      intronic chr20:35996215(+) A-I      intronic chr20:35996800(+) A-I      intronic chr20:36017138(+) A-I      intronic chr20:36020103(+) A-I      intronic chr20:36016993(+) A-I      intronic chr20:35996283(+) A-I      intronic chr20:36017115(+) A-I      intronic chr20:35994089(+) A-I      intronic chr20:36017137(+) A-I      intronic chr20:36020143(+) A-I      intronic chr20:35998778(+) A-I      intronic chr20:35998221(+) A-I      intronic chr20:36001987(+) A-I      intronic chr20:36020097(+) A-I      intronic chr20:35998465(+) A-I      intronic chr20:35998768(+) A-I      intronic chr20:36020105(+) A-I      intronic chr20:36019009(+) A-I      intronic chr20:36020190(+) A-I      intronic chr20:36019043(+) A-I      intronic chr20:36008178(+) A-I      intronic chr20:36020104(+) A-I      intronic chr20:35998220(+) A-I      intronic chr20:35994088(+) A-I      intronic chr20:36017008(+) A-I      intronic chr20:35996669(+) A-I      intronic chr20:36017102(+) A-I      intronic chr20:36017022(+) A-I      intronic chr20:36017075(+) A-I      intronic chr20:36008287(+) A-I      intronic chr20:36018958(+) A-I      intronic chr20:35998364(+) A-I      intronic chr20:36018943(+) A-I      intronic chr20:35998277(+) A-I      intronic chr20:36008220(+) A-I      intronic chr20:36016935(+) A-I      intronic chr20:36007965(+) A-I      intronic chr20:36020185(+) A-I      intronic chr20:35998437(+) A-I      intronic chr20:36008179(+) A-I      intronic chr20:36018950(+) A-I      intronic chr20:35998831(+) A-I      intronic chr20:35998857(+) A-I      intronic chr20:36000123(+) A-I      intronic chr20:36008077(+) A-I      intronic chr20:35998714(+) A-I      intronic chr20:35996574(+) A-I      intronic chr20:36020001(+) A-I      intronic chr20:35998342(+) A-I      intronic chr20:36000289(+) A-I      intronic chr20:35996670(+) A-I      intronic chr20:36016893(+) A-I      intronic chr20:35996236(+) A-I      intronic chr20:36020107(+) A-I      intronic chr20:36020098(+) A-I      intronic chr20:36002680(+) A-I      intronic chr20:36020081(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	SRC	chr20:36017008(+) A-I intron -    22327324 chr20:35996800(+) A-G intron -    22484847 chr20:36016967(+) A-G intron -    22484847 chr20:36017008(+) A-G intron -    22484847 chr20:36017022(+) A-G intron -    22484847 chr20:36017138(+) A-G intron -    22484847 chr20:36019082(+) A-G intron -    22484847 chr20:36020110(+) A-G intron -    22484847 chr20:36020251(+) C-T intron -    22484847 chr20:36006912(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SRC	chr20:35973090-35973091(+) m6A exon       24981863 chr20:35993614-35993615(+) m6A 5'UTR//exon       24981863 chr20:35993657-35993658(+) m6A 5'UTR//exon       24981863 chr20:35993675-35993676(+) m6A 5'UTR//exon       - chr20:36011065-36011066(+) m6A 5'UTR//exon       - chr20:36024642-36024643(+) m6A CDS//exon       - chr20:36028612-36028613(+) m1A CDS//exon       26863410 chr20:36031582-36031583(+) m6A CDS//exon       - chr20:36031597-36031598(+) m6A CDS//exon       - chr20:36031732-36031733(+) m6A CDS//exon       25456834//24981863 chr20:36031774-36031775(+) m6A CDS//exon       25456834//24981863 chr20:36031798-36031799(+) m6A 3'UTR//exon       25456834//24981863 chr20:36031946-36031947(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//22608085 chr20:36031982-36031983(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//22608085 chr20:36032072-36032073(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//22608085 chr20:36032140-36032141(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//22608085 chr20:36032268-36032269(+) m6A 3'UTR//exon       24209618//25456834//24981863//26404942//22608085 chr20:36032293-36032294(+) m6A 3'UTR//exon       24209618//25456834//24981863//26404942//22608085 chr20:36032383-36032384(+) m6A 3'UTR//exon       24284625//25456834//24981863//22608085 chr20:36032399-36032400(+) m6A 3'UTR//exon       24284625//25456834//24981863//26404942//22608085 chr20:36032408-36032409(+) m6A 3'UTR//exon       24284625//25456834//24981863//26404942//22608085 chr20:36032455-36032456(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//22608085 chr20:36032522-36032523(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//27773535//22608085 chr20:36032551-36032552(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//27773535//22608085 chr20:36032582-36032583(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//27773535//22608085 chr20:36032588-36032589(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//27773535//22608085 chr20:36032600-36032601(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//27773535//22608085 chr20:36032672-36032673(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//22608085 chr20:36032831-36032832(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//27773535 chr20:36033015-36033016(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//22608085 chr20:36033128-36033129(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22608085 chr20:36033154-36033155(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22608085 chr20:36033164-36033165(+) m6A 3'UTR//exon       25456834//24981863 chr20:36033366-36033367(+) m6A 3'UTR//exon       26404942 chr20:36033691-36033692(+) m6A 3'UTR//exon       24981863 chr20:36033739-36033740(+) m6A 3'UTR//exon       24981863 chr20:36033802-36033803(+) m6A 3'UTR//exon       24981863 chr20:36033808-36033809(+) m6A 3'UTR//exon       24981863 chr20:36033841-36033842(+) m6A 3'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SRC	Chromatin K562 cells     - Exosome Blood     - Membrane HCC cell line (HepG2)     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART7-5p
Interactor2: SRC

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg