Detail Information

Basic Information:


  VIRBase ID:  

VHID00394430

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART2-3p:           CALML4:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART2-3p CALML4
miRBase
Accession/Entrez ID		 MIMAT0004744 91860
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - NY-BR-20

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR CALML4
chr15:68494849(-) A-I      intronic
chr15:68488459(-) A-I      intronic
chr15:68494905(-) A-I      intronic
chr15:68494726(-) A-I      intronic
chr15:68495377(-) A-I      intronic
chr15:68495560(-) A-I      intronic
chr15:68491283(-) A-I      intronic
chr15:68494778(-) A-I      intronic
chr15:68494832(-) A-I      intronic
chr15:68495395(-) A-I      intronic
chr15:68495569(-) A-I      intronic
chr15:68495207(-) A-I      intronic
chr15:68494771(-) A-I      intronic
chr15:68494752(-) A-I      intronic
chr15:68491424(-) A-I      intronic
chr15:68491334(-) A-I      intronic
chr15:68494881(-) A-I      intronic
chr15:68495130(-) A-I      intronic
chr15:68495281(-) A-I      intronic
chr15:68495525(-) A-I      intronic
chr15:68495291(-) A-I      intronic
chr15:68495443(-) A-I      intronic
chr15:68491417(-) A-I      intronic
chr15:68491308(-) A-I      intronic
chr15:68495264(-) A-I      intronic
chr15:68491418(-) A-I      intronic
chr15:68495093(-) A-I      intronic
chr15:68495224(-) A-I      intronic
chr15:68492160(-) A-I      intronic
chr15:68494759(-) A-I      intronic
chr15:68494868(-) A-I      intronic
chr15:68494678(-) A-I      intronic
chr15:68495561(-) A-I      intronic
chr15:68492210(-) A-I      intronic
chr15:68494699(-) A-I      intronic
chr15:68495449(-) A-I      intronic
chr15:68495385(-) A-I      intronic
chr15:68494709(-) A-I      intronic
chr15:68494687(-) A-I      intronic
chr15:68494862(-) A-I      intronic
chr15:68495290(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED CALML4
chr15:68491283(-) A-I intron -    15342557   //15258596
chr15:68491308(-) A-I intron -    15342557   //15258596
chr15:68491334(-) A-I intron -    15342557   //15258596
chr15:68491417(-) A-I intron -    15342557   //15258596
chr15:68491418(-) A-I intron -    15342557   //15258596
chr15:68491424(-) A-I intron -    15342557   //15258596
chr15:68494726(-) A-I intron -    22327324
chr15:68494759(-) A-I intron -    22327324
chr15:68494905(-) A-I intron -    22327324
chr15:68494687(-) A-G intron -    22484847
chr15:68494709(-) A-G intron -    22484847
chr15:68494726(-) A-G intron -    22484847
chr15:68494759(-) A-G intron -    22484847
chr15:68494832(-) A-G intron -    22484847
chr15:68494849(-) A-G intron -    22484847
chr15:68494862(-) A-G intron -    22484847
chr15:68494905(-) A-G intron -    22484847
chr15:68495093(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase CALML4
chr15:68483494-68483495(-) m6A 3'UTR       24981863//27773535
chr15:68483519-68483520(-) m6A 3'UTR       24981863//27773535
chr15:68484520-68484521(-) m6A 3'UTR       -
chr15:68484942-68484943(-) m6A 3'UTR       24209618
chr15:68484948-68484949(-) m6A 3'UTR       24209618
chr15:68485384-68485385(-) m6A 3'UTR       27773535//22608085
chr15:68485445-68485446(-) m6A 3'UTR       25456834//27773535//27371828//22608085
chr15:68485614-68485615(-) m6A 3'UTR       24284625//27773535//22608085
chr15:68485687-68485688(-) m6A 3'UTR       24284625//27773535//22608085
chr15:68485701-68485702(-) m6A 3'UTR       24284625//27773535//22608085
chr15:68485721-68485722(-) m6A 3'UTR       24284625//27773535//22608085
chr15:68485835-68485836(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr15:68485899-68485900(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085
chr15:68485924-68485925(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr15:68486245-68486246(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//27371828//22608085
chr15:68486258-68486259(-) m6A 3'UTR//exon       24284625//24981863//27773535//27371828//22608085
chr15:68486315-68486316(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//27371828//22608085
chr15:68486359-68486360(-) m6A 3'UTR//CDS//exon       24284625//24209618//24981863//27773535//27371828//22608085
chr15:68486418-68486419(-) m6A 3'UTR//CDS//exon       24284625//24209618//24981863//27773535//27371828//22608085
chr15:68489814-68489815(-) m6A 3'UTR//CDS//exon//intron       24284625//24209618//27773535//22608085
chr15:68489860-68489861(-) m6A 3'UTR//CDS//exon//intron       27773535
chr15:68489899-68489900(-) m6A 3'UTR//CDS//exon//intron       27773535
chr15:68492091-68492092(-) m6A 5'UTR//intron       25456834
chr15:68492290-68492291(-) m6A 5'UTR//intron       25456834
chr15:68497469-68497470(-) m6A CDS//intron       25456834
chr15:68497638-68497639(-) m6A 5'UTR//CDS       25456834//24981863//27371828
chr15:68497660-68497661(-) m6A 5'UTR//CDS       25456834//24981863//27371828
chr15:68497667-68497668(-) m6A 5'UTR//CDS       25456834//24981863//27371828
chr15:68497839-68497840(-) m6A 5'UTR       24284625//24209618//25456834//24981863//27371828//22608085
chr15:68497881-68497882(-) m6A 5'UTR       24209618//25456834//24981863//22608085
chr15:68497915-68497916(-) m6A 5'UTR       24209618//25456834//24981863//22608085
chr15:68498138-68498139(-) m6A 5'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr15:68498189-68498190(-) m6A 5'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr15:68498201-68498202(-) m6A 5'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr15:68498261-68498262(-) m6A 5'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr15:68498278-68498279(-) m6A 5'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr15:68498283-68498284(-) m6A 5'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr15:68498331-68498332(-) m6A 5'UTR       24284625//24209618//25456834//24981863//27371828//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate CALML4
Chromatin K562 cells     -
Exosome Blood     -
Membrane K562 cells     -
Nucleolus K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART2-3p
Interactor2: CALML4

Evidence Support:


Prediction-Evidence miRanda//Targetscan
Support Database VmiReg

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