Detail Information

Basic Information:


  VIRBase ID:  

VHID00394373

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART2-3p:           TNS4:      

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Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART2-3p TNS4
miRBase
Accession/Entrez ID		 MIMAT0004744 84951
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - CTEN//PP14434

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR TNS4
chr17:38639299(-) A-I      intronic
chr17:38633032(-) A-I      3'UTR
chr17:38638804(-) A-I      intronic
chr17:38638813(-) A-I      intronic
chr17:38638833(-) A-I      intronic
chr17:38633029(-) A-I      3'UTR
chr17:38655020(-) A-I      intronic
chr17:38632872(-) A-I      3'UTR
chr17:38655047(-) A-I      intronic
chr17:38655074(-) A-I      intronic
chr17:38639300(-) A-I      intronic
chr17:38639326(-) A-I      intronic
chr17:38639699(-) A-I      intronic
chr17:38639734(-) A-I      intronic
chr17:38639725(-) A-I      intronic
chr17:38638930(-) A-I      intronic
chr17:38639264(-) A-I      intronic
chr17:38639275(-) A-I      intronic
chr17:38655082(-) A-I      intronic
chr17:38653664(-) A-I      intronic
chr17:38654948(-) A-I      intronic
chr17:38653673(-) A-I      intronic
chr17:38632860(-) A-I      3'UTR
chr17:38639294(-) A-I      intronic
chr17:38653743(-) A-I      intronic
chr17:38654925(-) A-I      intronic
chr17:38633039(-) A-I      3'UTR
chr17:38653621(-) A-I      intronic
chr17:38653792(-) A-I      intronic
chr17:38653822(-) A-I      intronic
chr17:38654847(-) A-I      intronic
chr17:38657469(-) A-I      intronic
chr17:38638948(-) A-I      intronic
chr17:38657482(-) A-I      intronic
chr17:38657495(-) A-I      intronic
chr17:38638954(-) A-I      intronic
chr17:38657496(-) A-I      intronic
chr17:38657516(-) A-I      intronic
chr17:38657599(-) A-I      intronic
chr17:38657616(-) A-I      intronic
chr17:38657673(-) A-I      intronic
chr17:38657678(-) A-I      intronic
chr17:38638967(-) A-I      intronic
chr17:38638947(-) A-I      intronic
chr17:38639564(-) A-I      intronic
chr17:38633058(-) A-I      3'UTR
chr17:38632934(-) A-I      3'UTR
chr17:38632925(-) A-I      3'UTR
chr17:38633015(-) A-I      3'UTR
chr17:38633007(-) A-I      3'UTR
chr17:38633052(-) A-I      3'UTR
chr17:38639451(-) A-I      intronic
chr17:38649367(-) A-I      intronic
chr17:38653769(-) A-I      intronic
chr17:38655080(-) A-I      intronic
chr17:38632873(-) A-I      3'UTR
chr17:38639444(-) A-I      intronic
chr17:38653611(-) A-I      intronic
chr17:38632960(-) A-I      3'UTR
chr17:38654963(-) A-I      intronic
chr17:38654938(-) A-I      intronic
chr17:38633006(-) A-I      3'UTR

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase TNS4
chr17:38633342-38633343(-) m6A 3'UTR//exon       25456834//24981863//27371828//22575960
chr17:38633356-38633357(-) m6A 3'UTR//exon       25456834//24981863//27371828//22575960
chr17:38633368-38633369(-) m6A 3'UTR//exon       25456834//24981863//27371828//22575960
chr17:38633428-38633429(-) m6A 3'UTR//exon       24284625//25456834//24981863//27371828//22575960
chr17:38633453-38633454(-) m6A 3'UTR//exon       24284625//25456834//24981863//27371828//22575960
chr17:38633506-38633507(-) m6A 3'UTR//exon       24284625//25456834//24981863//27371828//22575960
chr17:38633533-38633534(-) m6A 3'UTR//exon       24284625//25456834//24981863//27371828//22575960
chr17:38633574-38633575(-) m6A 3'UTR//exon       24284625//24981863//27371828//22575960
chr17:38633612-38633613(-) m6A 3'UTR//exon       24284625//24981863//27371828//22575960
chr17:38633620-38633621(-) m6A 3'UTR//exon       24284625//24981863//27371828//22575960
chr17:38633657-38633658(-) m6A 3'UTR//exon       24284625//24981863//27371828//22575960
chr17:38633692-38633693(-) m6A 3'UTR//exon       24284625//25456834//24981863//27371828//22575960
chr17:38633726-38633727(-) m6A 3'UTR//exon       24284625//25456834//24981863//27371828//22575960
chr17:38633739-38633740(-) m6A 3'UTR//exon       24284625//25456834//24981863//27371828//22575960
chr17:38633831-38633832(-) m6A 3'UTR//exon       24284625//25456834//24981863//26404942//27371828//22575960
chr17:38633952-38633953(-) m6A CDS//exon       24284625//24981863//22575960
chr17:38634179-38634180(-) m6A 3'UTR//intron       24981863
chr17:38634192-38634193(-) m6A 3'UTR//intron       24981863
chr17:38634201-38634202(-) m6A 3'UTR//intron       24981863
chr17:38634412-38634413(-) m6A 3'UTR//intron       24981863
chr17:38634511-38634512(-) m6A 3'UTR//exon//intron       24981863
chr17:38636055-38636056(-) m6A CDS//exon//intron       -
chr17:38636141-38636142(-) m6A exon//intron       -
chr17:38641216-38641217(-) m6A CDS       -
chr17:38641246-38641247(-) m6A CDS       -
chr17:38643323-38643324(-) m6A CDS       -
chr17:38643388-38643389(-) m6A CDS       22575960
chr17:38643396-38643397(-) m6A CDS       24981863//22575960
chr17:38643404-38643405(-) m6A CDS       24981863//22575960
chr17:38643429-38643430(-) m6A CDS       24981863//26404942//22575960
chr17:38643463-38643464(-) m6A CDS       24981863//26404942//22575960
chr17:38643507-38643508(-) m6A CDS       24284625//24981863//26404942//22575960
chr17:38643536-38643537(-) m6A CDS       24981863//26404942//22575960
chr17:38643565-38643566(-) m6A CDS       24981863//26404942//22575960
chr17:38643591-38643592(-) m6A CDS       24981863//26404942//22575960
chr17:38652310-38652311(-) m6A CDS       25456834//24981863//27371828//22575960
chr17:38652339-38652340(-) m6A CDS       25456834//24981863//27371828//22575960
chr17:38652344-38652345(-) m6A CDS       25456834//24981863//27371828//22575960
chr17:38652399-38652400(-) m6A CDS       25456834//24981863//27371828//22575960
chr17:38652409-38652410(-) m6A CDS       25456834//24981863//27371828//22575960
chr17:38652598-38652599(-) m6A CDS       -
chr17:38652700-38652701(-) m6A 5'UTR       22575960
chr17:38652711-38652712(-) m6A 5'UTR       22575960
chr17:38657791-38657792(-) m6A 5'UTR       22575960

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate TNS4
Exosome Blood     -
Nucleus HeLa-S3 cells     -

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART2-3p
Interactor2: TNS4

Evidence Support:


Prediction-Evidence cRep//miRanda//Targetscan
Support Database RepTar//VmiReg

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