Basic Information:

  VIRBase ID:  

VHID00393886

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART2-3p:  MIMAT0004744          PCMTD2:  NM_001104925     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART2-3p	PCMTD2
miRBase Accession/Entrez ID	MIMAT0004744	55251
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	C20orf36

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	PCMTD2	chr20:62919072(+) A-I      Syn:Leu->Leu chr20:62919094(+) A-I      NonSyn:Thr->Ala chr20:62919077(+) A-I      NonSyn:Gln->Arg chr20:62893381(+) A-I      intronic chr20:62919030(+) A-I      intronic chr20:62892256(+) A-I      intronic chr20:62892173(+) A-I      intronic chr20:62893359(+) A-I      intronic chr20:62893356(+) A-I      intronic chr20:62892138(+) A-I      intronic chr20:62893404(+) A-I      intronic chr20:62892309(+) A-I      intronic chr20:62892095(+) A-I      intronic chr20:62903917(+) A-I      intronic chr20:62904117(+) A-I      intronic chr20:62892321(+) A-I      intronic chr20:62893351(+) A-I      intronic chr20:62904094(+) A-I      intronic chr20:62892118(+) A-I      intronic chr20:62893484(+) A-I      intronic chr20:62893350(+) A-I      intronic chr20:62892267(+) A-I      intronic chr20:62892290(+) A-I      intronic chr20:62892808(+) A-I      intronic chr20:62893486(+) A-I      intronic chr20:62893405(+) A-I      intronic chr20:62893411(+) A-I      intronic chr20:62892299(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	PCMTD2	chr20:62887198-62887199(+) m6A 5'UTR       22608085 chr20:62891278-62891279(+) m6A 5'UTR//intron       24284625//24981863 chr20:62891316-62891317(+) m6A 5'UTR//exon       24284625//24981863//22608085 chr20:62891346-62891347(+) m6A CDS//exon       24284625//24209618//24981863//22608085 chr20:62891393-62891394(+) m6A CDS//exon       24284625//24209618//24981863//22608085 chr20:62891436-62891437(+) m6A CDS       24284625//24209618//24981863//22608085 chr20:62891475-62891476(+) m6A CDS       24284625//24209618//24981863//22608085 chr20:62891496-62891497(+) m6A CDS       24284625//24981863//22608085 chr20:62891560-62891561(+) m6A CDS//intron       24284625//24981863//22608085 chr20:62891574-62891575(+) m6A CDS//intron       24284625//24981863//22608085 chr20:62896625-62896626(+) m6A CDS//intron       - chr20:62896711-62896712(+) Am CDS//intron       - chr20:62899278-62899279(+) m6A CDS//intron       24284625 chr20:62899349-62899350(+) m6A CDS       24284625//22608085 chr20:62902882-62902883(+) m6A exon//intron       24284625//22608085 chr20:62902918-62902919(+) m6A exon//intron       24284625//22608085 chr20:62902929-62902930(+) m6A exon//intron       24284625//22608085 chr20:62903161-62903162(+) m6A exon//intron       25456834 chr20:62903511-62903512(+) m6A exon//intron       - chr20:62903540-62903541(+) m6A exon//intron       24284625//24981863//22608085 chr20:62904600-62904601(+) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//22608085 chr20:62904653-62904654(+) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr20:62904676-62904677(+) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr20:62904684-62904685(+) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr20:62904747-62904748(+) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr20:62904804-62904805(+) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr20:62904839-62904840(+) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr20:62904851-62904852(+) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr20:62904861-62904862(+) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr20:62904873-62904874(+) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr20:62905063-62905064(+) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr20:62905159-62905160(+) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr20:62905249-62905250(+) m6A 3'UTR//exon//intron       24284625//24981863//22575960//22608085 chr20:62905272-62905273(+) m6A 3'UTR//exon//intron       24284625//24981863//22575960//22608085 chr20:62905326-62905327(+) m6A 3'UTR//exon//intron       24284625//24981863//22608085 chr20:62905338-62905339(+) m6A 3'UTR//exon//intron       24284625//24981863//22608085 chr20:62906774-62906775(+) m6A 3'UTR//intron       26404942 chr20:62906791-62906792(+) m6A 3'UTR//intron       26404942

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	PCMTD2	Cytosol K562 cells     - Exosome Blood     - Nucleoplasm K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART2-3p
Interactor2: PCMTD2

Evidence Support:

Prediction-Evidence	cRep//miRanda
Support Database	RepTar//VmiReg