Basic Information:

  VIRBase ID:  

VHID00393843

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART2-3p:  MIMAT0004744          TMEM104:  NM_001321264     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART2-3p	TMEM104
miRBase Accession/Entrez ID	MIMAT0004744	54868
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	TMEM104	chr17:72779172(+) A-I      intronic chr17:72784180(+) A-I      intronic chr17:72784207(+) A-I      intronic chr17:72779179(+) A-I      intronic chr17:72784213(+) A-I      intronic chr17:72779203(+) A-I      intronic chr17:72773880(+) A-I      intronic chr17:72773955(+) A-I      intronic chr17:72774831(+) A-I      intronic chr17:72774838(+) A-I      intronic chr17:72774844(+) A-I      intronic chr17:72775090(+) A-I      intronic chr17:72778317(+) A-I      intronic chr17:72778324(+) A-I      intronic chr17:72778382(+) A-I      intronic chr17:72780033(+) A-I      intronic chr17:72780029(+) A-I      intronic chr17:72779080(+) A-I      intronic chr17:72829415(+) A-I      intronic chr17:72829263(+) A-I      intronic chr17:72778483(+) A-I      intronic chr17:72829256(+) A-I      intronic chr17:72829212(+) A-I      intronic chr17:72784115(+) A-I      intronic chr17:72829267(+) A-I      intronic chr17:72784058(+) A-I      intronic chr17:72784050(+) A-I      intronic chr17:72784037(+) A-I      intronic chr17:72784033(+) A-I      intronic chr17:72784007(+) A-I      intronic chr17:72829428(+) A-I      intronic chr17:72783959(+) A-I      intronic chr17:72783646(+) A-I      intronic chr17:72783506(+) A-I      intronic chr17:72780109(+) A-I      intronic chr17:72780068(+) A-I      intronic chr17:72774035(+) A-I      intronic chr17:72779127(+) A-I      intronic chr17:72778336(+) A-I      intronic chr17:72774901(+) A-I      intronic chr17:72779094(+) A-I      intronic chr17:72774851(+) A-I      intronic chr17:72784195(+) A-I      intronic chr17:72779086(+) A-I      intronic chr17:72779013(+) A-I      intronic chr17:72773907(+) A-I      intronic chr17:72784132(+) A-I      intronic chr17:72784109(+) A-I      intronic chr17:72774036(+) A-I      intronic chr17:72774042(+) A-I      intronic chr17:72778475(+) A-I      intronic chr17:72774908(+) A-I      intronic chr17:72779084(+) A-I      intronic chr17:72780140(+) A-I      intronic chr17:72783523(+) A-I      intronic chr17:72779014(+) A-I      intronic chr17:72783956(+) A-I      intronic chr17:72784098(+) A-I      intronic chr17:72784062(+) A-I      intronic chr17:72779176(+) A-I      intronic chr17:72786115(+) A-I      intronic chr17:72784172(+) A-I      intronic chr17:72784185(+) A-I      intronic chr17:72778459(+) A-I      intronic chr17:72774818(+) A-I      intronic chr17:72779185(+) A-I      intronic chr17:72779019(+) A-I      intronic chr17:72774881(+) A-I      intronic chr17:72783774(+) A-I      intronic chr17:72774009(+) A-I      intronic chr17:72779149(+) A-I      intronic chr17:72773898(+) A-I      intronic chr17:72779105(+) A-I      intronic chr17:72809672(+) A-I      intronic chr17:72773933(+) A-I      intronic chr17:72774911(+) A-I      intronic chr17:72778421(+) A-I      intronic chr17:72829292(+) A-I      intronic chr17:72774868(+) A-I      intronic chr17:72774852(+) A-I      intronic chr17:72778487(+) A-I      intronic chr17:72774933(+) A-I      intronic chr17:72774264(+) A-I      intronic chr17:72773894(+) A-I      intronic chr17:72778387(+) A-I      intronic chr17:72778268(+) A-I      intronic chr17:72779195(+) A-I      intronic chr17:72778346(+) A-I      intronic chr17:72774907(+) A-I      intronic chr17:72784099(+) A-I      intronic chr17:72784094(+) A-I      intronic chr17:72778307(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	TMEM104	chr17:72774009(+) A-G intron -    22484847 chr17:72774035(+) A-G intron -    22484847 chr17:72774036(+) A-G intron -    22484847 chr17:72779013(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	TMEM104	chr17:72815911-72815912(+) m6A CDS       24284625 chr17:72815939-72815940(+) m6A CDS       24284625 chr17:72832111-72832112(+) m6A CDS//intron       24284625//24209618//25456834//24981863 chr17:72832158-72832159(+) m6A CDS//intron       24284625//24209618//25456834//24981863 chr17:72832263-72832264(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22575960 chr17:72832341-72832342(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22575960 chr17:72832478-72832479(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22608085 chr17:72832521-72832522(+) m6A CDS//intron       24284625//24209618//25456834//24981863 chr17:72832677-72832678(+) m6A CDS//intron       24284625//25456834//24981863 chr17:72832814-72832815(+) m6A CDS//intron       - chr17:72832833-72832834(+) m6A 3'UTR//intron       - chr17:72832933-72832934(+) m6A 3'UTR//intron       24981863 chr17:72832951-72832952(+) m6A 3'UTR//intron       24284625//24209618//24981863 chr17:72833082-72833083(+) m6A 3'UTR//intron       24284625//24981863 chr17:72833208-72833209(+) m6A 3'UTR//intron       24284625//24981863 chr17:72833257-72833258(+) m6A 3'UTR//exon//intron       24284625//24981863 chr17:72833411-72833412(+) m6A 3'UTR//exon//intron       - chr17:72833519-72833520(+) m6A 3'UTR//intron       - chr17:72833571-72833572(+) m6A 3'UTR//intron       - chr17:72833924-72833925(+) m6A 3'UTR//exon//intron       24284625//25456834//24981863//22608085 chr17:72833943-72833944(+) m6A 3'UTR//exon//intron       24284625//25456834//24981863//22608085 chr17:72833979-72833980(+) m6A 3'UTR//exon//intron       24284625//25456834//24981863 chr17:72834396-72834397(+) m6A 3'UTR//intron       24284625 chr17:72834497-72834498(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22608085 chr17:72834523-72834524(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22608085 chr17:72834530-72834531(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22608085 chr17:72834539-72834540(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22608085 chr17:72834576-72834577(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22608085 chr17:72834615-72834616(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22608085 chr17:72834680-72834681(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22608085 chr17:72834727-72834728(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22608085 chr17:72834766-72834767(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr17:72834904-72834905(+) m6A 3'UTR//intron       - chr17:72835116-72835117(+) m6A 3'UTR//CDS       24284625 chr17:72835196-72835197(+) m6A 3'UTR//CDS       - chr17:72835230-72835231(+) m6A 3'UTR//CDS       24284625 chr17:72835336-72835337(+) m6A 3'UTR       24284625//25456834//24981863 chr17:72835470-72835471(+) m6A 3'UTR       25456834//24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	TMEM104	Chromatin K562 cells     - Cytosol HCC cell line (HepG2)|K562 cells     - Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Membrane HCC cell line (HepG2)|K562 cells     - Nucleolus HeLa-S3 cells|K562 cells     - Nucleoplasm HeLa-S3 cells|K562 cells     - Nucleus HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART2-3p
Interactor2: TMEM104

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Rep//Targetscan
Support Database	RepTar//VmiReg