Detail Information

Basic Information:


  VIRBase ID:  

VHID00393500

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART2-3p:           ZC3H4:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART2-3p ZC3H4
miRBase
Accession/Entrez ID		 MIMAT0004744 23211
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - C19orf7

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR ZC3H4
chr19:47604354(-) A-I      intronic
chr19:47591241(-) A-I      intronic
chr19:47586460(-) A-I      intronic
chr19:47586370(-) A-I      intronic
chr19:47585797(-) A-I      intronic
chr19:47584403(-) A-I      intronic
chr19:47584394(-) A-I      intronic
chr19:47584132(-) A-I      intronic
chr19:47583850(-) A-I      intronic
chr19:47604379(-) A-I      intronic
chr19:47604440(-) A-I      intronic
chr19:47604545(-) A-I      intronic
chr19:47604553(-) A-I      intronic
chr19:47592638(-) A-I      intronic
chr19:47583097(-) A-I      intronic
chr19:47604609(-) A-I      intronic
chr19:47583075(-) A-I      intronic
chr19:47604885(-) A-I      intronic
chr19:47605228(-) A-I      intronic
chr19:47605247(-) A-I      intronic
chr19:47579919(-) A-I      intronic
chr19:47579939(-) A-I      intronic
chr19:47591256(-) A-I      intronic
chr19:47592706(-) A-I      intronic
chr19:47592707(-) A-I      intronic
chr19:47583044(-) A-I      intronic
chr19:47592723(-) A-I      intronic
chr19:47582970(-) A-I      intronic
chr19:47582558(-) A-I      intronic
chr19:47582451(-) A-I      intronic
chr19:47582442(-) A-I      intronic
chr19:47582245(-) A-I      intronic
chr19:47582202(-) A-I      intronic
chr19:47581973(-) A-I      intronic
chr19:47581871(-) A-I      intronic
chr19:47581738(-) A-I      intronic
chr19:47581551(-) A-I      intronic
chr19:47597014(-) A-I      intronic
chr19:47603985(-) A-I      intronic
chr19:47604022(-) A-I      intronic
chr19:47604156(-) A-I      intronic
chr19:47607537(-) A-I      intronic
chr19:47582987(-) A-I      intronic
chr19:47606725(-) A-I      intronic
chr19:47586479(-) A-I      intronic
chr19:47584354(-) A-I      intronic
chr19:47582077(-) A-I      intronic
chr19:47604470(-) A-I      intronic
chr19:47582221(-) A-I      intronic
chr19:47583815(-) A-I      intronic
chr19:47580415(-) A-I      intronic
chr19:47604148(-) A-I      intronic
chr19:47581796(-) A-I      intronic
chr19:47582201(-) A-I      intronic
chr19:47585821(-) A-I      intronic
chr19:47604492(-) A-I      intronic
chr19:47582925(-) A-I      intronic
chr19:47584195(-) A-I      intronic
chr19:47581885(-) A-I      intronic
chr19:47581568(-) A-I      intronic
chr19:47585773(-) A-I      intronic
chr19:47581633(-) A-I      intronic
chr19:47604436(-) A-I      intronic
chr19:47576664(-) A-I      intronic
chr19:47581879(-) A-I      intronic
chr19:47582162(-) A-I      intronic
chr19:47582227(-) A-I      intronic
chr19:47583893(-) A-I      intronic
chr19:47586844(-) A-I      intronic
chr19:47606699(-) A-I      intronic
chr19:47580832(-) A-I      intronic
chr19:47582112(-) A-I      intronic
chr19:47579962(-) A-I      intronic
chr19:47581631(-) A-I      intronic
chr19:47584197(-) A-I      intronic
chr19:47582532(-) A-I      intronic
chr19:47580483(-) A-I      intronic
chr19:47597002(-) A-I      intronic
chr19:47604753(-) A-I      intronic
chr19:47604084(-) A-I      intronic
chr19:47582447(-) A-I      intronic
chr19:47592341(-) A-I      intronic
chr19:47584365(-) A-I      intronic
chr19:47596941(-) A-I      intronic
chr19:47581002(-) A-I      intronic
chr19:47604018(-) A-I      intronic
chr19:47581583(-) A-I      intronic
chr19:47586398(-) A-I      intronic
chr19:47584188(-) A-I      intronic
chr19:47606668(-) A-I      intronic
chr19:47583955(-) A-I      intronic
chr19:47584357(-) A-I      intronic
chr19:47604774(-) A-I      intronic
chr19:47581658(-) A-I      intronic
chr19:47580854(-) A-I      intronic
chr19:47604758(-) A-I      intronic
chr19:47585807(-) A-I      intronic
chr19:47606730(-) A-I      intronic
chr19:47584284(-) A-I      intronic
chr19:47604394(-) A-I      intronic
chr19:47605252(-) A-I      intronic
chr19:47584069(-) A-I      intronic
chr19:47592661(-) A-I      intronic
chr19:47579931(-) A-I      intronic
chr19:47586779(-) A-I      intronic
chr19:47579883(-) A-I      intronic
chr19:47604053(-) A-I      intronic
chr19:47582479(-) A-I      intronic
chr19:47596987(-) A-I      intronic
chr19:47604585(-) A-I      intronic
chr19:47606622(-) A-I      intronic
chr19:47607513(-) A-I      intronic
chr19:47584254(-) A-I      intronic
chr19:47603986(-) A-I      intronic
chr19:47586723(-) A-I      intronic
chr19:47590879(-) A-I      intronic
chr19:47583845(-) A-I      intronic
chr19:47581632(-) A-I      intronic
chr19:47604480(-) A-I      intronic
chr19:47606632(-) A-I      intronic
chr19:47586399(-) A-I      intronic
chr19:47581783(-) A-I      intronic
chr19:47596875(-) A-I      intronic
chr19:47581951(-) A-I      intronic
chr19:47606734(-) A-I      intronic
chr19:47584050(-) A-I      intronic
chr19:47582567(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED ZC3H4
chr19:47583893(-) A-I intron -    22327324
chr19:47585842(-) A-I intron -    21960545
chr19:47583893(-) A-G intron -    22484847
chr19:47584007(-) A-G intron -    22484847
chr19:47584028(-) A-G intron -    22484847
chr19:47584430(-) A-G intron -    22484847
chr19:47585769(-) A-G intron -    22484847
chr19:47590879(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase ZC3H4
chr19:47567592-47567593(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr19:47567730-47567731(-) m6A 3'UTR       24284625//24981863//27773535//22575960//22608085
chr19:47567740-47567741(-) m6A 3'UTR       24284625//24981863//27773535//22575960//22608085
chr19:47567800-47567801(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr19:47568095-47568096(-) m6A 3'UTR       24981863
chr19:47568140-47568141(-) m6A 3'UTR//exon       24284625//24981863
chr19:47568192-47568193(-) m6A 3'UTR//exon       24284625//24981863//22575960
chr19:47568357-47568358(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr19:47568458-47568459(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr19:47568469-47568470(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr19:47568484-47568485(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr19:47568640-47568641(-) m6A 3'UTR//exon       24284625//25456834//24981863//27773535//27371828//22575960//22608085
chr19:47568691-47568692(-) m6A 3'UTR//exon       24284625//25456834//24981863//27773535//27371828//22575960//22608085
chr19:47568890-47568891(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr19:47568895-47568896(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr19:47569063-47569064(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr19:47569121-47569122(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr19:47569165-47569166(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr19:47569171-47569172(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr19:47569178-47569179(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr19:47569230-47569231(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr19:47569239-47569240(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr19:47569319-47569320(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr19:47569343-47569344(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr19:47569351-47569352(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr19:47569369-47569370(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr19:47569541-47569542(-) m6A 3'UTR//exon       24981863//27773535
chr19:47569703-47569704(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr19:47569740-47569741(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr19:47569886-47569887(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085
chr19:47569923-47569924(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085
chr19:47569933-47569934(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085
chr19:47570067-47570068(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085
chr19:47570134-47570135(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085
chr19:47570264-47570265(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085
chr19:47570272-47570273(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085
chr19:47570323-47570324(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr19:47570370-47570371(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr19:47570392-47570393(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr19:47570498-47570499(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085
chr19:47570576-47570577(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr19:47570672-47570673(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr19:47570699-47570700(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr19:47570711-47570712(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085
chr19:47570866-47570867(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr19:47570917-47570918(-) m6A CDS//intron       24284625//25456834//24981863//27371828//27773536//22575960//22608085
chr19:47570924-47570925(-) m6A CDS//intron       24284625//25456834//24981863//27371828//27773536//22575960//22608085
chr19:47570968-47570969(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr19:47570987-47570988(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr19:47571057-47571058(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr19:47571113-47571114(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960
chr19:47572365-47572366(-) m6A CDS//intron       24284625//25456834//24981863//27773535//27371828//27773536//22575960
chr19:47572596-47572597(-) m6A CDS//intron       24284625//27371828//27773536
chr19:47575050-47575051(-) m6A CDS//intron       24284625//27371828//27773536
chr19:47575090-47575091(-) m6A CDS//intron       27371828
chr19:47575102-47575103(-) m6A CDS//intron       27371828
chr19:47575147-47575148(-) m6A CDS//intron       27371828
chr19:47575228-47575229(-) m6A CDS//intron       27773535//27371828//27773536
chr19:47575240-47575241(-) m6A CDS//intron       27371828//27773536
chr19:47575264-47575265(-) m6A CDS//intron       27371828//27773536
chr19:47575323-47575324(-) m6A CDS//intron       27371828//27773536
chr19:47575359-47575360(-) m6A CDS//intron       27371828//27773536
chr19:47575368-47575369(-) m6A CDS//intron       27371828//27773536
chr19:47575883-47575884(-) m6A CDS//intron       27773536
chr19:47575909-47575910(-) m1A CDS//intron       26863410
chr19:47575916-47575917(-) m6A CDS//intron       27773536
chr19:47585547-47585548(-) m6A CDS//intron       27773535
chr19:47587653-47587654(-) m6A CDS//intron       24284625//24209618//27773535//27371828//27773536//22575960
chr19:47588319-47588320(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960
chr19:47588334-47588335(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960
chr19:47588361-47588362(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960
chr19:47588588-47588589(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960
chr19:47588609-47588610(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960
chr19:47589683-47589684(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960
chr19:47593264-47593265(-) m6A CDS//exon       24284625//24209618//24981863//27773535//27371828//27773536//22575960
chr19:47593291-47593292(-) m6A CDS//exon       24284625//24209618//24981863//27773535//27371828//22575960
chr19:47593306-47593307(-) m6A CDS//exon       24284625//24209618//24981863//27773535//27371828//22575960
chr19:47593354-47593355(-) m6A CDS//exon       24284625//24209618//24981863//27773535//27371828//22575960
chr19:47593381-47593382(-) m6A CDS//exon       24284625//24209618//24981863//27773535//27371828//22575960
chr19:47597025-47597026(-) m6A exon//intron       24284625//24209618//24981863//27773535//27371828
chr19:47597038-47597039(-) m6A exon//intron       24284625//24209618//24981863//27773535//27371828
chr19:47597061-47597062(-) m6A exon//intron       24284625//24981863//27773535//27371828
chr19:47597067-47597068(-) m6A exon//intron       24284625//24981863//27773535//27371828
chr19:47597073-47597074(-) m6A exon//intron       24284625//24981863//27773535//27371828
chr19:47597668-47597669(-) m1A CDS//exon       26863196//26863410
chr19:47597720-47597721(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22608085
chr19:47597812-47597813(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr19:47597844-47597845(-) m1A CDS//exon       26863196//26863410
chr19:47614169-47614170(-) m6A exon//intron       24284625//25456834//24981863//27773535//27371828//27773536//22575960
chr19:47615822-47615823(-) m6A CDS       24981863
chr19:47615843-47615844(-) m6A 5'UTR       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate ZC3H4
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol K562 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART2-3p
Interactor2: ZC3H4

Evidence Support:


Prediction-Evidence cRep//miRanda//Rep//Targetscan
Support Database RepTar//VmiReg

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