Detail Information

Basic Information:


  VIRBase ID:  

VHID00392779

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART2-3p:           PLOD2:      

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Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART2-3p PLOD2
miRBase
Accession/Entrez ID		 MIMAT0004744 5352
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - BRKS2//LH2//TLH

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR PLOD2
chr3:145800533(-) A-I      intronic
chr3:145800547(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase PLOD2
chr3:145787781-145787782(-) m6A 3'UTR       26404942
chr3:145787848-145787849(-) m6A 3'UTR       26404942
chr3:145787902-145787903(-) m6A 3'UTR       27773535
chr3:145787931-145787932(-) m6A 3'UTR       27773535
chr3:145787977-145787978(-) m6A 3'UTR       27773535
chr3:145788016-145788017(-) m6A 3'UTR       27773535
chr3:145788069-145788070(-) m6A 3'UTR//exon       27773535
chr3:145788106-145788107(-) m6A 3'UTR//exon       27773535
chr3:145788177-145788178(-) m6A 3'UTR//exon       27773535
chr3:145788276-145788277(-) m6A 3'UTR//exon       24981863//27773535//22608085
chr3:145788306-145788307(-) m6A 3'UTR//exon       24284625//24981863//27773535//22608085
chr3:145788359-145788360(-) m6A 3'UTR//exon       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr3:145788370-145788371(-) m6A 3'UTR//exon       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr3:145788390-145788391(-) m6A 3'UTR//exon       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr3:145788449-145788450(-) m6A 3'UTR//exon       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr3:145788538-145788539(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//22575960//22608085
chr3:145788557-145788558(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//22575960//22608085
chr3:145788578-145788579(-) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr3:145788835-145788836(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr3:145788862-145788863(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr3:145790353-145790354(-) m6A CDS//exon       22575960
chr3:145790380-145790381(-) m6A CDS//exon       22575960
chr3:145796991-145796992(-) m6A CDS//exon       22575960
chr3:145804508-145804509(-) m6A exon//intron       24981863
chr3:145804582-145804583(-) m6A CDS//exon       24981863
chr3:145838942-145838943(-) m6A 3'UTR//CDS       24981863//26404942
chr3:145841066-145841067(-) m6A CDS//intron       24981863//26404942
chr3:145878696-145878697(-) m6A 5'UTR//CDS//intron       22575960
chr3:145878858-145878859(-) m6A 5'UTR//intron       27773536//22575960

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate PLOD2
Cytosol HCC cell line (HepG2)|HeLa-S3 cells     -
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Endoplasmic reticulum Human fibrosarcoma cells (HT1080)     25753659
Exosome Blood     -
Nucleus HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART2-3p
Interactor2: PLOD2

Evidence Support:


Prediction-Evidence miRanda//PITA//Rep//Targetscan
Support Database RepTar//VmiReg

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