Basic Information:

  VIRBase ID:  

VHID00392516

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART2-3p:  MIMAT0004744          GCNT1:  NM_001097635     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART2-3p	GCNT1
miRBase Accession/Entrez ID	MIMAT0004744	2650
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	C2GNT//C2GNT-L//C2GNT1//G6NT//NACGT2//NAGCT2

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	GCNT1	chr9:79088936(+) A-I      intronic chr9:79060681(+) A-I      intronic chr9:79060815(+) A-I      intronic chr9:79061977(+) A-I      intronic chr9:79061991(+) A-I      intronic chr9:79061996(+) A-I      intronic chr9:79063277(+) A-I      intronic chr9:79076389(+) A-I      intronic chr9:79087720(+) A-I      intronic chr9:79113609(+) A-I      intronic chr9:79113592(+) A-I      intronic chr9:79113508(+) A-I      intronic chr9:79103550(+) A-I      intronic chr9:79097673(+) A-I      intronic chr9:79102912(+) A-I      intronic chr9:79102911(+) A-I      intronic chr9:79101745(+) A-I      intronic chr9:79099227(+) A-I      intronic chr9:79098559(+) A-I      intronic chr9:79098460(+) A-I      intronic chr9:79098448(+) A-I      intronic chr9:79097702(+) A-I      intronic chr9:79092303(+) A-I      intronic chr9:79092295(+) A-I      intronic chr9:79092284(+) A-I      intronic chr9:79114093(+) A-I      intronic chr9:79092282(+) A-I      intronic chr9:79092018(+) A-I      intronic chr9:79091960(+) A-I      intronic chr9:79087739(+) A-I      intronic chr9:79091957(+) A-I      intronic chr9:79088998(+) A-I      intronic chr9:79088996(+) A-I      intronic chr9:79088769(+) A-I      intronic chr9:79087927(+) A-I      intronic chr9:79087758(+) A-I      intronic chr9:79076549(+) A-I      intronic chr9:79076575(+) A-I      intronic chr9:79076589(+) A-I      intronic chr9:79078862(+) A-I      intronic chr9:79079156(+) A-I      intronic chr9:79087912(+) A-I      intronic chr9:79079416(+) A-I      intronic chr9:79087926(+) A-I      intronic chr9:79082059(+) A-I      intronic chr9:79082098(+) A-I      intronic chr9:79082165(+) A-I      intronic chr9:79085341(+) A-I      intronic chr9:79086122(+) A-I      intronic chr9:79086189(+) A-I      intronic chr9:79086858(+) A-I      intronic chr9:79113610(+) A-I      intronic chr9:79113706(+) A-I      intronic chr9:79114227(+) A-I      intronic chr9:79114259(+) A-I      intronic chr9:79080132(+) A-I      intronic chr9:79080197(+) A-I      intronic chr9:79085440(+) A-I      intronic chr9:79088805(+) A-I      intronic chr9:79121284(+) A-I      3'UTR chr9:79121269(+) A-I      3'UTR chr9:79121268(+) A-I      3'UTR chr9:79121264(+) A-I      3'UTR chr9:79121358(+) A-I      3'UTR chr9:79076685(+) A-I      intronic chr9:79087221(+) A-I      intronic chr9:79085291(+) A-I      intronic chr9:79100832(+) A-I      intronic chr9:79095900(+) A-I      intronic chr9:79099068(+) A-I      intronic chr9:79076744(+) A-I      intronic chr9:79099236(+) A-I      intronic chr9:79114210(+) A-I      intronic chr9:79114069(+) A-I      intronic chr9:79087721(+) A-I      intronic chr9:79098607(+) A-I      intronic chr9:79086127(+) A-I      intronic chr9:79085264(+) A-I      intronic chr9:79087745(+) A-I      intronic chr9:79114137(+) A-I      intronic chr9:79085251(+) A-I      intronic chr9:79088961(+) A-I      intronic chr9:79097490(+) A-I      intronic chr9:79080314(+) A-I      intronic chr9:79098553(+) A-I      intronic chr9:79076654(+) A-I      intronic chr9:79114138(+) A-I      intronic chr9:79096034(+) A-I      intronic chr9:79078897(+) A-I      intronic chr9:79076684(+) A-I      intronic chr9:79097530(+) A-I      intronic chr9:79121254(+) A-I      3'UTR chr9:79088937(+) A-I      intronic chr9:79088757(+) A-I      intronic chr9:79063118(+) A-I      intronic chr9:79088995(+) A-I      intronic chr9:79088864(+) A-I      intronic chr9:79081380(+) A-I      intronic chr9:79087120(+) A-I      intronic chr9:79088856(+) A-I      intronic chr9:79082962(+) A-I      intronic chr9:79099194(+) A-I      intronic chr9:79064941(+) A-I      intronic chr9:79088868(+) A-I      intronic chr9:79081379(+) A-I      intronic chr9:79076658(+) A-I      intronic chr9:79086959(+) A-I      intronic chr9:79086161(+) A-I      intronic chr9:79078857(+) A-I      intronic chr9:79076594(+) A-I      intronic chr9:79060404(+) A-I      intronic chr9:79099202(+) A-I      intronic chr9:79091965(+) A-I      intronic chr9:79085483(+) A-I      intronic chr9:79072265(+) A-I      intronic chr9:79076602(+) A-I      intronic chr9:79079272(+) A-I      intronic chr9:79089957(+) A-I      intronic chr9:79098849(+) A-I      intronic chr9:79088960(+) A-I      intronic chr9:79087044(+) A-I      intronic chr9:79079555(+) A-I      intronic chr9:79085334(+) A-I      intronic chr9:79060752(+) A-I      intronic chr9:79072078(+) A-I      intronic chr9:79080140(+) A-I      intronic chr9:79079353(+) A-I      intronic chr9:79098873(+) A-I      intronic chr9:79079476(+) A-I      intronic chr9:79086139(+) A-I      intronic chr9:79060629(+) A-I      intronic chr9:79086853(+) A-I      intronic chr9:79060887(+) A-I      intronic chr9:79076352(+) A-I      intronic chr9:79076542(+) A-I      intronic chr9:79078902(+) A-I      intronic chr9:79087181(+) A-I      intronic chr9:79096033(+) A-I      intronic chr9:79085242(+) A-I      intronic chr9:79076334(+) A-I      intronic chr9:79088761(+) A-I      intronic chr9:79099107(+) A-I      intronic chr9:79092011(+) A-I      intronic chr9:79098400(+) A-I      intronic chr9:79098601(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	GCNT1	chr9:79076654(+) A-G intron -    22484847 chr9:79076658(+) A-G intron -    22484847 chr9:79076684(+) A-G intron -    22484847 chr9:79076685(+) A-G intron -    22484847 chr9:79076711(+) A-G intron -    22484847 chr9:79088757(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	GCNT1	chr9:79056966-79056967(+) m6A 5'UTR//intron       - chr9:79057042-79057043(+) m6A 5'UTR//intron       - chr9:79115957-79115958(+) m6A 5'UTR//exon       24209618 chr9:79117200-79117201(+) m6A 5'UTR//exon       25456834//22608085 chr9:79117258-79117259(+) m6A 5'UTR//exon       24284625//25456834//24981863//22608085 chr9:79117323-79117324(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22608085 chr9:79117428-79117429(+) m6A CDS       24284625//24209618//24981863//22608085 chr9:79117561-79117562(+) m6A CDS       24284625//24209618//24981863//22608085 chr9:79117580-79117581(+) m6A CDS       24284625//24209618//24981863//22608085 chr9:79117632-79117633(+) m6A CDS       24284625//24209618//24981863//22608085 chr9:79117760-79117761(+) m6A CDS       24284625//24981863//22608085 chr9:79117922-79117923(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr9:79117969-79117970(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr9:79118015-79118016(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr9:79118099-79118100(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr9:79118107-79118108(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr9:79118134-79118135(+) m6A CDS       24209618//25456834//24981863//22608085 chr9:79118237-79118238(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr9:79118462-79118463(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr9:79118478-79118479(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr9:79118553-79118554(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr9:79118569-79118570(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr9:79118577-79118578(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr9:79118605-79118606(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr9:79118697-79118698(+) m6A 3'UTR       24209618//24981863//22608085 chr9:79118856-79118857(+) m6A 3'UTR       24981863//22608085 chr9:79118915-79118916(+) m6A 3'UTR       24981863//22608085 chr9:79118950-79118951(+) m6A 3'UTR       24981863//22608085 chr9:79118996-79118997(+) m6A 3'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	GCNT1	Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART2-3p
Interactor2: GCNT1

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Rep//Targetscan
Support Database	RepTar//VmiReg