Basic Information:

  VIRBase ID:  

VHID00392471

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART2-3p:  MIMAT0004744          CLN8:  NM_018941     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART2-3p	CLN8
miRBase Accession/Entrez ID	MIMAT0004744	2055
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	C8orf61//EPMR//TLCD6

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	CLN8	chr8:1718692(+) A-I      intronic chr8:1718725(+) A-I      intronic chr8:1720754(+) A-I      intronic chr8:1722895(+) A-I      intronic chr8:1722904(+) A-I      intronic chr8:1722930(+) A-I      intronic chr8:1727654(+) A-I      intronic chr8:1720909(+) A-I      intronic chr8:1720926(+) A-I      intronic chr8:1723006(+) A-I      intronic chr8:1718693(+) A-I      intronic chr8:1720880(+) A-I      intronic chr8:1718729(+) A-I      intronic chr8:1718696(+) A-I      intronic chr8:1720742(+) A-I      intronic chr8:1720885(+) A-I      intronic chr8:1720907(+) A-I      intronic chr8:1720908(+) A-I      intronic chr8:1720644(+) A-I      intronic chr8:1718717(+) A-I      intronic chr8:1718712(+) A-I      intronic chr8:1718735(+) A-I      intronic chr8:1718728(+) A-I      intronic chr8:1718726(+) A-I      intronic chr8:1732357(+) A-I      3'UTR chr8:1732292(+) A-I      3'UTR chr8:1732202(+) A-I      3'UTR chr8:1730572(+) A-I      3'UTR chr8:1730361(+) A-I      3'UTR chr8:1729362(+) A-I      3'UTR chr8:1732363(+) A-I      3'UTR chr8:1729395(+) A-I      3'UTR chr8:1729409(+) A-I      3'UTR chr8:1729425(+) A-I      3'UTR chr8:1729444(+) A-I      3'UTR chr8:1732406(+) A-I      3'UTR chr8:1732372(+) A-I      3'UTR chr8:1720686(+) A-I      intronic chr8:1727539(+) A-I      intronic chr8:1720284(+) A-I      intronic chr8:1722897(+) A-I      intronic chr8:1723032(+) A-I      intronic chr8:1732353(+) A-I      3'UTR chr8:1729404(+) A-I      3'UTR chr8:1729363(+) A-I      3'UTR chr8:1730385(+) A-I      3'UTR chr8:1730485(+) A-I      3'UTR chr8:1729269(+) A-I      3'UTR chr8:1729397(+) A-I      3'UTR chr8:1730391(+) A-I      3'UTR chr8:1730450(+) A-I      3'UTR chr8:1732379(+) A-I      3'UTR chr8:1729338(+) A-I      3'UTR chr8:1730520(+) A-I      3'UTR chr8:1730375(+) A-I      3'UTR chr8:1729314(+) A-I      3'UTR chr8:1730491(+) A-I      3'UTR chr8:1729348(+) A-I      3'UTR chr8:1732352(+) A-I      3'UTR chr8:1732266(+) A-I      3'UTR chr8:1732174(+) A-I      3'UTR chr8:1730397(+) A-I      3'UTR chr8:1732322(+) A-I      3'UTR chr8:1732276(+) A-I      3'UTR chr8:1729274(+) A-I      3'UTR chr8:1729430(+) A-I      3'UTR chr8:1729353(+) A-I      3'UTR chr8:1729259(+) A-I      3'UTR chr8:1730494(+) A-I      3'UTR chr8:1732252(+) A-I      3'UTR chr8:1730558(+) A-I      3'UTR chr8:1729295(+) A-I      3'UTR chr8:1730540(+) A-I      3'UTR chr8:1732383(+) A-I      3'UTR chr8:1732360(+) A-I      3'UTR chr8:1729364(+) A-I      3'UTR chr8:1729346(+) A-I      3'UTR chr8:1729374(+) A-I      3'UTR chr8:1730573(+) A-I      3'UTR chr8:1732196(+) A-I      3'UTR chr8:1723086(+) A-I      intronic chr8:1723054(+) A-I      intronic chr8:1722926(+) A-I      intronic chr8:1720829(+) A-I      intronic chr8:1720826(+) A-I      intronic chr8:1722944(+) A-I      intronic chr8:1727594(+) A-I      intronic chr8:1720235(+) A-I      intronic chr8:1723016(+) A-I      intronic chr8:1720287(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	CLN8	chr8:1730330(+) A-I intron -    21960545   //22327324 chr8:1730440(+) A-I intron -    21960545 chr8:1729259(+) A-G intron -    21725310 chr8:1730330(+) A-G intron -    21725310   //22484847 chr8:1720686(+) A-G intron -    22484847 chr8:1723032(+) A-G intron -    22484847 chr8:1723054(+) A-G intron -    22484847 chr8:1727457(+) A-G intron -    22484847 chr8:1727539(+) A-G intron -    22484847 chr8:1727594(+) A-G intron -    22484847 chr8:1729348(+) A-G intron -    22484847 chr8:1729363(+) A-G intron -    22484847 chr8:1730397(+) A-G intron -    22484847 chr8:1730440(+) A-G intron -    22484847 chr8:1730491(+) A-G intron -    22484847 chr8:1730494(+) A-G intron -    22484847 chr8:1730500(+) A-G intron -    22484847 chr8:1730508(+) A-G intron -    22484847 chr8:1730558(+) A-G intron -    22484847 chr8:1732197(+) A-G intron -    22484847 chr8:1732383(+) A-G intron -    22484847 chr8:1732451(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CLN8	chr8:1703948-1703949(+) m6A 5'UTR//exon       24981863 chr8:1704007-1704008(+) m6A 5'UTR//exon       24981863 chr8:1704051-1704052(+) m6A 5'UTR//exon       24981863 chr8:1707619-1707620(+) m6A exon//intron       24981863 chr8:1712085-1712086(+) m6A 5'UTR//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr8:1719127-1719128(+) m6A 5'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr8:1719154-1719155(+) m6A 5'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr8:1719159-1719160(+) m6A 5'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr8:1719194-1719195(+) m6A 5'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr8:1719217-1719218(+) m6A 5'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr8:1719269-1719270(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr8:1719413-1719414(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr8:1719482-1719483(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr8:1719521-1719522(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr8:1719607-1719608(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr8:1721092-1721093(+) m6A exon//intron       24284625 chr8:1728582-1728583(+) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr8:1728619-1728620(+) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr8:1728631-1728632(+) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr8:1728656-1728657(+) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr8:1728662-1728663(+) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr8:1729521-1729522(+) m6A 3'UTR       25456834 chr8:1729558-1729559(+) m6A 3'UTR       25456834//24981863 chr8:1729602-1729603(+) m6A 3'UTR       25456834//24981863 chr8:1732440-1732441(+) m6A 3'UTR       - chr8:1732469-1732470(+) m6A 3'UTR       - chr8:1733803-1733804(+) m6A 3'UTR       24284625 chr8:1733848-1733849(+) m6A 3'UTR       24284625 chr8:1733893-1733894(+) m6A 3'UTR       24284625 chr8:1733938-1733939(+) m6A 3'UTR       24284625 chr8:1733970-1733971(+) m6A 3'UTR       24284625

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	CLN8	Chromatin K562 cells     - Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART2-3p
Interactor2: CLN8

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//Targetscan
Support Database	RepTar//VmiReg