Detail Information

Basic Information:


  VIRBase ID:  

VHID00391486

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART20-3p:           ANKRD54:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART20-3p ANKRD54
miRBase
Accession/Entrez ID		 MIMAT0003720 129138
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - LIAR

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR ANKRD54
chr22:38232297(-) A-I      intronic
chr22:38231763(-) A-I      intronic
chr22:38231877(-) A-I      intronic
chr22:38231144(-) A-I      intronic
chr22:38231274(-) A-I      intronic
chr22:38231621(-) A-I      intronic
chr22:38231691(-) A-I      intronic
chr22:38232013(-) A-I      intronic
chr22:38232021(-) A-I      intronic
chr22:38232031(-) A-I      intronic
chr22:38232006(-) A-I      intronic
chr22:38231213(-) A-I      intronic
chr22:38237489(-) A-I      intronic
chr22:38232839(-) A-I      intronic
chr22:38231257(-) A-I      intronic
chr22:38235523(-) A-I      intronic
chr22:38232113(-) A-I      intronic
chr22:38232127(-) A-I      intronic
chr22:38231799(-) A-I      intronic
chr22:38231751(-) A-I      intronic
chr22:38232046(-) A-I      intronic
chr22:38239185(-) A-I      intronic
chr22:38235726(-) A-I      intronic
chr22:38231125(-) A-I      intronic
chr22:38232341(-) A-I      intronic
chr22:38231064(-) A-I      intronic
chr22:38231187(-) A-I      intronic
chr22:38232114(-) A-I      intronic
chr22:38231912(-) A-I      intronic
chr22:38231554(-) A-I      intronic
chr22:38231919(-) A-I      intronic
chr22:38233031(-) A-I      intronic
chr22:38231744(-) A-I      intronic
chr22:38232924(-) A-I      intronic
chr22:38231625(-) A-I      intronic
chr22:38230944(-) A-I      intronic
chr22:38232291(-) A-I      intronic
chr22:38231665(-) A-I      intronic
chr22:38231207(-) A-I      intronic
chr22:38233838(-) A-I      intronic
chr22:38232271(-) A-I      intronic
chr22:38231806(-) A-I      intronic
chr22:38231970(-) A-I      intronic
chr22:38231925(-) A-I      intronic
chr22:38232022(-) A-I      intronic
chr22:38231876(-) A-I      intronic
chr22:38235772(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED ANKRD54
chr22:38231367(-) A-G intron -    22484847
chr22:38232046(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase ANKRD54
chr22:38226895-38226896(-) m6A 3'UTR//exon       24981863//27773535//27371828//22608085
chr22:38226939-38226940(-) m6A 3'UTR//exon       25456834//24981863//27773535//27371828//22608085
chr22:38227047-38227048(-) m6A 3'UTR//exon       24981863//27773535//27371828
chr22:38227457-38227458(-) m6A 3'UTR//exon       24981863
chr22:38227473-38227474(-) m6A 3'UTR//exon       24981863
chr22:38227603-38227604(-) m6A 3'UTR//exon       27773535
chr22:38227647-38227648(-) m6A 3'UTR//exon       24284625//27773535//27773536
chr22:38227666-38227667(-) m6A 3'UTR//exon       24284625//27773535//27773536
chr22:38227699-38227700(-) m6A 3'UTR//exon       24284625//25456834//27773535//27371828//27773536//22575960
chr22:38227738-38227739(-) m6A 3'UTR//exon       24284625//25456834//24981863//27773535//27371828//27773536//22575960
chr22:38227744-38227745(-) m6A 3'UTR//exon       24284625//25456834//24981863//27773535//27371828//27773536//22575960
chr22:38227838-38227839(-) m6A 3'UTR//exon       24284625//24981863//27371828//22575960
chr22:38227865-38227866(-) m6A 3'UTR//exon       24284625//24981863//27371828
chr22:38236196-38236197(-) m6A 5'UTR//CDS//exon//intron       27773536
chr22:38236222-38236223(-) m6A 5'UTR//CDS//exon//intron       27773536
chr22:38236230-38236231(-) m6A 5'UTR//CDS//exon//intron       27773536
chr22:38239666-38239667(-) m6A 5'UTR//intron       27773536
chr22:38244201-38244202(-) m6A exon//intron       25456834//27773535//22608085
chr22:38244211-38244212(-) m6A exon//intron       25456834//27773535//22608085
chr22:38244243-38244244(-) m6A exon//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr22:38244286-38244287(-) m6A exon//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr22:38244339-38244340(-) m6A exon//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr22:38244360-38244361(-) m6A exon//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr22:38244429-38244430(-) m6A exon//intron       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr22:38244498-38244499(-) m6A exon//intron       24284625//24209618//24981863//22608085
chr22:38244595-38244596(-) m6A exon//intron       24284625//24209618//24981863//22608085
chr22:38244618-38244619(-) m6A exon//intron       24284625//24209618//24981863//22608085
chr22:38244728-38244729(-) m6A exon//intron       24284625//24209618//24981863//27773535//22608085
chr22:38244733-38244734(-) m6A exon//intron       24284625//24209618//24981863//27773535//22608085
chr22:38244743-38244744(-) m6A exon//intron       24284625//24209618//24981863//27773535//22608085
chr22:38244867-38244868(-) m6A exon//intron       24284625//24209618//24981863//27773535//22608085
chr22:38244905-38244906(-) m6A exon//intron       24284625//24209618//24981863//27773535//22608085
chr22:38244956-38244957(-) m6A 5'UTR//exon       24284625//24981863//27773535//22608085
chr22:38245018-38245019(-) m6A 5'UTR//exon       24284625//24981863//27773535//22608085
chr22:38245089-38245090(-) m6A 5'UTR//exon       22608085
chr22:38245185-38245186(-) m6A 5'UTR//exon       24209618
chr22:38245208-38245209(-) m6A 5'UTR//exon       24209618

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate ANKRD54
Chromatin K562 cells     -
Cytosol HeLa-S3 cells     -
Exosome Blood     -
Nucleoplasm K562 cells     -
Ribosome Colon cancer cells     24393600

Related Drug Information:


Resource Symbol Drug Name PubChem ID
RNAactDrug ebv-miR-BART20-3p
Crizotinib       11626560

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART20-3p
Interactor2: ANKRD54

Evidence Support:


Prediction-Evidence miRanda//Targetscan
Support Database VmiReg

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