Basic Information:

  VIRBase ID:  

VHID00391471

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.6040

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART20-3p:  MIMAT0003720          TYW3:  NR_027962     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART20-3p	TYW3
miRBase Accession/Entrez ID	MIMAT0003720	127253
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	C1orf171

RNA Editing:

Resource	Symbol	Editing Position
Lncediting	TYW3	chr1: 75217103     chr1: 75217102     chr1: 75217080     chr1: 75216770     chr1: 75216758     chr1: 75216757     chr1: 75216735

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	TYW3	chr1:75216725(+) A-I      intronic chr1:75216609(+) A-I      intronic chr1:75216566(+) A-I      intronic chr1:75216236(+) A-I      intronic chr1:75216198(+) A-I      intronic chr1:75216197(+) A-I      intronic chr1:75216169(+) A-I      intronic chr1:75216168(+) A-I      intronic chr1:75216157(+) A-I      intronic chr1:75216131(+) A-I      intronic chr1:75216097(+) A-I      intronic chr1:75215984(+) A-I      intronic chr1:75215560(+) A-I      intronic chr1:75212466(+) A-I      intronic chr1:75212508(+) A-I      intronic chr1:75215396(+) A-I      intronic chr1:75215440(+) A-I      intronic chr1:75215484(+) A-I      intronic chr1:75216528(+) A-I      intronic chr1:75215561(+) A-I      intronic chr1:75215623(+) A-I      intronic chr1:75215565(+) A-I      intronic chr1:75216730(+) A-I      intronic chr1:75216662(+) A-I      intronic chr1:75216101(+) A-I      intronic chr1:75216592(+) A-I      intronic chr1:75216522(+) A-I      intronic chr1:75215624(+) A-I      intronic chr1:75217102(+) A-I      intronic chr1:75216735(+) A-I      intronic chr1:75216770(+) A-I      intronic chr1:75215493(+) A-I      intronic chr1:75215533(+) A-I      intronic chr1:75216235(+) A-I      intronic chr1:75213531(+) A-I      intronic chr1:75216757(+) A-I      intronic chr1:75216561(+) A-I      intronic chr1:75213417(+) A-I      intronic chr1:75216585(+) A-I      intronic chr1:75216090(+) A-I      intronic chr1:75216758(+) A-I      intronic chr1:75213383(+) A-I      intronic chr1:75213419(+) A-I      intronic chr1:75217103(+) A-I      intronic chr1:75217080(+) A-I      intronic chr1:75216661(+) A-I      intronic chr1:75213595(+) A-I      intronic chr1:75216718(+) A-I      intronic chr1:75216596(+) A-I      intronic chr1:75213461(+) A-I      intronic chr1:75213421(+) A-I      intronic chr1:75216591(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	TYW3	chr1:75216735(+) A-I intron -    15258596 chr1:75216757(+) A-I intron -    15258596 chr1:75216758(+) A-I intron -    15258596 chr1:75216770(+) A-I intron -    15258596 chr1:75217080(+) A-I intron -    15258596 chr1:75217102(+) A-I intron -    15258596 chr1:75213383(+) A-I intron -    22327324 chr1:75213417(+) A-I intron -    22327324 chr1:75213419(+) A-I intron -    22327324 chr1:75213421(+) A-I intron -    22327324 chr1:75213461(+) A-I intron -    22327324 chr1:75213531(+) A-I intron -    22327324 chr1:75213595(+) A-I intron -    22327324

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	TYW3	chr1:75198910-75198911(+) m6A 5'UTR       24284625//24981863 chr1:75198983-75198984(+) m6A 5'UTR//CDS       24284625//24981863 chr1:75199040-75199041(+) m6A 5'UTR//CDS       - chr1:75214497-75214498(+) m6A CDS//exon       27773535 chr1:75218025-75218026(+) m6A CDS//exon       27773535 chr1:75218090-75218091(+) m6A CDS//exon       27773535 chr1:75227352-75227353(+) m6A exon//intron       27773535 chr1:75227399-75227400(+) m6A exon//intron       24981863//27773535 chr1:75229684-75229685(+) m6A CDS//exon       24284625//24981863//27773535//22608085 chr1:75229695-75229696(+) m6A CDS//exon       24284625//24981863//27773535//22608085 chr1:75229733-75229734(+) m6A CDS//exon       24284625//24981863//27773535//22608085 chr1:75231707-75231708(+) m6A 3'UTR//intron       24981863 chr1:75231752-75231753(+) m6A 3'UTR//intron       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	TYW3	Chromatin K562 cells     - Exosome Blood     - Nucleoplasm K562 cells     - Nucleus K562 cells     -

Related Drug Information:

Resource	Symbol	Drug Name	PubChem ID
RNAactDrug	ebv-miR-BART20-3p	Crizotinib       11626560

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART20-3p
Interactor2: TYW3

Evidence Support:

Weak-Evidence	PAR-CLIP
Prediction-Evidence	cRep//miRanda//PARalyzer//Targetscan
Support Database	RepTar//ViRBase//VIRmiRNA//VmiReg

References:

PMID	22100165	Target region	3'UTR
Source	RepTar//ViRBase//VIRmiRNA//VmiReg	Interactor1 expression	None
Tissue or cell line	BC-1 cells	Interactor2 expression	None
Description	Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites.Clusters with seed matches to expressed miRNAs were considered candidate target sites. Of the clusters mapping to human 3'UTRs, 69% (BC-1) and 70% (BC-3) had seed matches to expressed miRNAs (Tables S6).Table S6A BC-1 derived 3'UTR clusters with seed matches to expressed miRNAs.