Basic Information:

  VIRBase ID:  

VHID00390985

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART20-3p:  MIMAT0003720          PANK2:  NM_001324191     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART20-3p	PANK2
miRBase Accession/Entrez ID	MIMAT0003720	80025
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	C20orf48//HARP//HSS//NBIA1//PKAN

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	PANK2	chr20:3892448(+) A-I      intronic chr20:3901053(+) A-I      intronic chr20:3901043(+) A-I      intronic chr20:3901042(+) A-I      intronic chr20:3899846(+) A-I      intronic chr20:3899843(+) A-I      intronic chr20:3899728(+) A-I      intronic chr20:3899711(+) A-I      intronic chr20:3899695(+) A-I      intronic chr20:3900967(+) A-I      intronic chr20:3892447(+) A-I      intronic chr20:3892450(+) A-I      intronic chr20:3905998(+) A-I      3'UTR chr20:3893506(+) A-I      intronic chr20:3899779(+) A-I      intronic chr20:3893454(+) A-I      intronic chr20:3893435(+) A-I      intronic chr20:3906061(+) A-I      3'UTR chr20:3892449(+) A-I      intronic chr20:3906084(+) A-I      3'UTR chr20:3899741(+) A-I      intronic chr20:3905985(+) A-I      3'UTR chr20:3892518(+) A-I      intronic chr20:3907429(+) A-I      3'UTR chr20:3892471(+) A-I      intronic chr20:3892444(+) A-I      intronic chr20:3906022(+) A-I      3'UTR chr20:3907431(+) A-I      3'UTR chr20:3872750(+) A-I      intronic chr20:3872749(+) A-I      intronic chr20:3872728(+) A-I      intronic chr20:3878447(+) A-I      intronic chr20:3900920(+) A-I      intronic chr20:3900998(+) A-I      intronic chr20:3901003(+) A-I      intronic chr20:3901004(+) A-I      intronic chr20:3901007(+) A-I      intronic chr20:3901011(+) A-I      intronic chr20:3901012(+) A-I      intronic chr20:3901143(+) A-I      intronic chr20:3901261(+) A-I      intronic chr20:3901340(+) A-I      intronic chr20:3901394(+) A-I      intronic chr20:3902421(+) A-I      intronic chr20:3902432(+) A-I      intronic chr20:3902475(+) A-I      intronic chr20:3902484(+) A-I      intronic chr20:3902499(+) A-I      intronic chr20:3902510(+) A-I      intronic chr20:3902524(+) A-I      intronic chr20:3902586(+) A-I      intronic chr20:3902602(+) A-I      intronic chr20:3896147(+) A-I      intronic chr20:3899739(+) A-I      intronic chr20:3899653(+) A-I      intronic chr20:3896190(+) A-I      intronic chr20:3872733(+) A-I      intronic chr20:3896125(+) A-I      intronic chr20:3896110(+) A-I      intronic chr20:3896050(+) A-I      intronic chr20:3896032(+) A-I      intronic chr20:3894621(+) A-I      intronic chr20:3894618(+) A-I      intronic chr20:3894612(+) A-I      intronic chr20:3894256(+) A-I      intronic chr20:3894132(+) A-I      intronic chr20:3894120(+) A-I      intronic chr20:3894090(+) A-I      intronic chr20:3894084(+) A-I      intronic chr20:3894068(+) A-I      intronic chr20:3894034(+) A-I      intronic chr20:3893581(+) A-I      intronic chr20:3893580(+) A-I      intronic chr20:3893557(+) A-I      intronic chr20:3893439(+) A-I      intronic chr20:3893401(+) A-I      intronic chr20:3893387(+) A-I      intronic chr20:3887716(+) A-I      intronic chr20:3887704(+) A-I      intronic chr20:3887585(+) A-I      intronic chr20:3887546(+) A-I      intronic chr20:3886977(+) A-I      intronic chr20:3886940(+) A-I      intronic chr20:3886920(+) A-I      intronic chr20:3886873(+) A-I      intronic chr20:3886808(+) A-I      intronic chr20:3885044(+) A-I      intronic chr20:3879109(+) A-I      intronic chr20:3879108(+) A-I      intronic chr20:3878564(+) A-I      intronic chr20:3878521(+) A-I      intronic chr20:3878467(+) A-I      intronic chr20:3878228(+) A-I      intronic chr20:3878092(+) A-I      intronic chr20:3875830(+) A-I      intronic chr20:3875794(+) A-I      intronic chr20:3875792(+) A-I      intronic chr20:3875739(+) A-I      intronic chr20:3875326(+) A-I      intronic chr20:3875319(+) A-I      intronic chr20:3875251(+) A-I      intronic chr20:3872943(+) A-I      intronic chr20:3872942(+) A-I      intronic chr20:3872832(+) A-I      intronic chr20:3872814(+) A-I      intronic chr20:3872813(+) A-I      intronic chr20:3907451(+) A-I      3'UTR chr20:3907450(+) A-I      3'UTR chr20:3907574(+) A-I      3'UTR chr20:3907401(+) A-I      3'UTR chr20:3907367(+) A-I      3'UTR chr20:3906142(+) A-I      3'UTR chr20:3905907(+) A-I      3'UTR chr20:3906066(+) A-I      3'UTR chr20:3906055(+) A-I      3'UTR chr20:3905921(+) A-I      3'UTR chr20:3905936(+) A-I      3'UTR chr20:3907577(+) A-I      3'UTR chr20:3907533(+) A-I      3'UTR chr20:3907484(+) A-I      3'UTR chr20:3907434(+) A-I      3'UTR chr20:3872871(+) A-I      intronic chr20:3900949(+) A-I      intronic chr20:3892172(+) A-I      intronic chr20:3901121(+) A-I      intronic chr20:3899751(+) A-I      intronic chr20:3878147(+) A-I      intronic chr20:3901073(+) A-I      intronic chr20:3901144(+) A-I      intronic chr20:3896205(+) A-I      intronic chr20:3874718(+) A-I      intronic chr20:3901371(+) A-I      intronic chr20:3876058(+) A-I      intronic chr20:3885032(+) A-I      intronic chr20:3875670(+) A-I      intronic chr20:3893411(+) A-I      intronic chr20:3899683(+) A-I      intronic chr20:3885120(+) A-I      intronic chr20:3885148(+) A-I      intronic chr20:3900944(+) A-I      intronic chr20:3886817(+) A-I      intronic chr20:3878190(+) A-I      intronic chr20:3878505(+) A-I      intronic chr20:3882918(+) A-I      intronic chr20:3901402(+) A-I      intronic chr20:3886986(+) A-I      intronic chr20:3884957(+) A-I      intronic chr20:3886912(+) A-I      intronic chr20:3890152(+) A-I      intronic chr20:3899628(+) A-I      intronic chr20:3871836(+) A-I      intronic chr20:3892363(+) A-I      intronic chr20:3894191(+) A-I      intronic chr20:3894234(+) A-I      intronic chr20:3899572(+) A-I      intronic chr20:3876016(+) A-I      intronic chr20:3896204(+) A-I      intronic chr20:3893512(+) A-I      intronic chr20:3878452(+) A-I      intronic chr20:3878490(+) A-I      intronic chr20:3878558(+) A-I      intronic chr20:3893450(+) A-I      intronic chr20:3893517(+) A-I      intronic chr20:3873177(+) A-I      intronic chr20:3883845(+) A-I      intronic chr20:3876001(+) A-I      intronic chr20:3874740(+) A-I      intronic chr20:3894095(+) A-I      intronic chr20:3885153(+) A-I      intronic chr20:3901442(+) A-I      intronic chr20:3875684(+) A-I      intronic chr20:3875671(+) A-I      intronic chr20:3899737(+) A-I      intronic chr20:3896128(+) A-I      intronic chr20:3876849(+) A-I      intronic chr20:3901244(+) A-I      intronic chr20:3875991(+) A-I      intronic chr20:3887890(+) A-I      intronic chr20:3900984(+) A-I      intronic chr20:3872870(+) A-I      intronic chr20:3894565(+) A-I      intronic chr20:3899820(+) A-I      intronic chr20:3901005(+) A-I      intronic chr20:3901449(+) A-I      intronic chr20:3878491(+) A-I      intronic chr20:3886268(+) A-I      intronic chr20:3893441(+) A-I      intronic chr20:3886382(+) A-I      intronic chr20:3901372(+) A-I      intronic chr20:3906015(+) A-I      3'UTR chr20:3906053(+) A-I      3'UTR chr20:3906120(+) A-I      3'UTR chr20:3905955(+) A-I      3'UTR chr20:3906010(+) A-I      3'UTR chr20:3907479(+) A-I      3'UTR chr20:3905905(+) A-I      3'UTR chr20:3905961(+) A-I      3'UTR chr20:3907537(+) A-I      3'UTR chr20:3907331(+) A-I      3'UTR chr20:3907332(+) A-I      3'UTR chr20:3907337(+) A-I      3'UTR chr20:3907500(+) A-I      3'UTR chr20:3906155(+) A-I      3'UTR chr20:3906020(+) A-I      3'UTR chr20:3907496(+) A-I      3'UTR chr20:3907377(+) A-I      3'UTR chr20:3907348(+) A-I      3'UTR chr20:3906081(+) A-I      3'UTR chr20:3906103(+) A-I      3'UTR chr20:3907542(+) A-I      3'UTR chr20:3905984(+) A-I      3'UTR chr20:3905925(+) A-I      3'UTR chr20:3906090(+) A-I      3'UTR chr20:3907409(+) A-I      3'UTR chr20:3907385(+) A-I      3'UTR chr20:3905950(+) A-I      3'UTR chr20:3907410(+) A-I      3'UTR chr20:3907443(+) A-I      3'UTR chr20:3906064(+) A-I      3'UTR chr20:3907353(+) A-I      3'UTR chr20:3907521(+) A-I      3'UTR chr20:3907470(+) A-I      3'UTR chr20:3907411(+) A-I      3'UTR chr20:3893382(+) A-I      intronic chr20:3892143(+) A-I      intronic chr20:3878193(+) A-I      intronic chr20:3901339(+) A-I      intronic chr20:3875997(+) A-I      intronic chr20:3893432(+) A-I      intronic chr20:3900987(+) A-I      intronic chr20:3901084(+) A-I      intronic chr20:3883995(+) A-I      intronic chr20:3902523(+) A-I      intronic chr20:3899811(+) A-I      intronic chr20:3901365(+) A-I      intronic chr20:3899827(+) A-I      intronic chr20:3901381(+) A-I      intronic chr20:3886255(+) A-I      intronic chr20:3900943(+) A-I      intronic chr20:3901016(+) A-I      intronic chr20:3899793(+) A-I      intronic chr20:3892453(+) A-I      intronic chr20:3893553(+) A-I      intronic chr20:3899657(+) A-I      intronic chr20:3900985(+) A-I      intronic chr20:3900909(+) A-I      intronic chr20:3871838(+) A-I      intronic chr20:3893499(+) A-I      intronic chr20:3896111(+) A-I      intronic chr20:3893518(+) A-I      intronic chr20:3875087(+) A-I      intronic chr20:3877002(+) A-I      intronic chr20:3892158(+) A-I      intronic chr20:3894094(+) A-I      intronic chr20:3878964(+) A-I      intronic chr20:3901437(+) A-I      intronic chr20:3885093(+) A-I      intronic chr20:3872884(+) A-I      intronic chr20:3879013(+) A-I      intronic chr20:3899615(+) A-I      intronic chr20:3899654(+) A-I      intronic chr20:3894174(+) A-I      intronic chr20:3899764(+) A-I      intronic chr20:3876789(+) A-I      intronic chr20:3899833(+) A-I      intronic chr20:3902594(+) A-I      intronic chr20:3894091(+) A-I      intronic chr20:3901302(+) A-I      intronic chr20:3893509(+) A-I      intronic chr20:3899592(+) A-I      intronic chr20:3901327(+) A-I      intronic chr20:3901002(+) A-I      intronic chr20:3899666(+) A-I      intronic chr20:3886810(+) A-I      intronic chr20:3875744(+) A-I      intronic chr20:3899633(+) A-I      intronic chr20:3884016(+) A-I      intronic chr20:3878951(+) A-I      intronic chr20:3895391(+) A-I      intronic chr20:3899720(+) A-I      intronic chr20:3893360(+) A-I      intronic chr20:3893503(+) A-I      intronic chr20:3893344(+) A-I      intronic chr20:3893447(+) A-I      intronic chr20:3893415(+) A-I      intronic chr20:3899835(+) A-I      intronic chr20:3886466(+) A-I      intronic chr20:3901239(+) A-I      intronic chr20:3878259(+) A-I      intronic chr20:3902497(+) A-I      intronic chr20:3900904(+) A-I      intronic chr20:3879663(+) A-I      intronic chr20:3901085(+) A-I      intronic chr20:3879056(+) A-I      intronic chr20:3878947(+) A-I      intronic chr20:3899696(+) A-I      intronic chr20:3878399(+) A-I      intronic chr20:3886885(+) A-I      intronic chr20:3896217(+) A-I      intronic chr20:3899680(+) A-I      intronic chr20:3899719(+) A-I      intronic chr20:3886924(+) A-I      intronic chr20:3872911(+) A-I      intronic chr20:3878599(+) A-I      intronic chr20:3873203(+) A-I      intronic chr20:3899613(+) A-I      intronic chr20:3899734(+) A-I      intronic chr20:3893358(+) A-I      intronic chr20:3878986(+) A-I      intronic chr20:3901092(+) A-I      intronic chr20:3901483(+) A-I      intronic chr20:3882891(+) A-I      intronic chr20:3875800(+) A-I      intronic chr20:3886098(+) A-I      intronic chr20:3901330(+) A-I      intronic chr20:3896174(+) A-I      intronic chr20:3901482(+) A-I      intronic chr20:3894979(+) A-I      intronic chr20:3878093(+) A-I      intronic chr20:3901247(+) A-I      intronic chr20:3886111(+) A-I      intronic chr20:3886967(+) A-I      intronic chr20:3901336(+) A-I      intronic chr20:3901277(+) A-I      intronic chr20:3902458(+) A-I      intronic chr20:3901040(+) A-I      intronic chr20:3878950(+) A-I      intronic chr20:3899821(+) A-I      intronic chr20:3876082(+) A-I      intronic chr20:3882835(+) A-I      intronic chr20:3878396(+) A-I      intronic chr20:3886906(+) A-I      intronic chr20:3871815(+) A-I      intronic chr20:3887888(+) A-I      intronic chr20:3875801(+) A-I      intronic chr20:3886973(+) A-I      intronic chr20:3893445(+) A-I      intronic chr20:3884995(+) A-I      intronic chr20:3894009(+) A-I      intronic chr20:3887626(+) A-I      intronic chr20:3884972(+) A-I      intronic chr20:3885046(+) A-I      intronic chr20:3895431(+) A-I      intronic chr20:3899794(+) A-I      intronic chr20:3874708(+) A-I      intronic chr20:3896045(+) A-I      intronic chr20:3901341(+) A-I      intronic chr20:3871889(+) A-I      intronic chr20:3893436(+) A-I      intronic chr20:3886996(+) A-I      intronic chr20:3894130(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	PANK2	chr20:3899737(+) A-I intron -    22327324 chr20:3899793(+) A-I intron -    22327324 chr20:3899794(+) A-I intron -    22327324 chr20:3901149(+) A-I intron -    22327324 chr20:3901361(+) A-I intron -    22327324 chr20:3879013(+) A-G intron -    22484847 chr20:3885139(+) A-G intron -    22484847 chr20:3885153(+) A-G intron -    22484847 chr20:3893349(+) A-G intron -    22484847 chr20:3893374(+) A-G intron -    22484847 chr20:3893444(+) A-G intron -    22484847 chr20:3893512(+) A-G intron -    22484847 chr20:3896205(+) A-G intron -    22484847 chr20:3896217(+) A-G intron -    22484847 chr20:3899613(+) A-G intron -    22484847 chr20:3899654(+) A-G intron -    22484847 chr20:3899719(+) A-G intron -    22484847 chr20:3899737(+) A-G intron -    22484847 chr20:3899740(+) A-G intron -    22484847 chr20:3899764(+) A-G intron -    22484847 chr20:3899793(+) A-G intron -    22484847 chr20:3899794(+) A-G intron -    22484847 chr20:3900895(+) A-G intron -    22484847 chr20:3900939(+) A-G intron -    22484847 chr20:3901001(+) A-G intron -    22484847 chr20:3901005(+) A-G intron -    22484847 chr20:3901016(+) A-G intron -    22484847 chr20:3901070(+) A-G intron -    22484847 chr20:3901084(+) A-G intron -    22484847 chr20:3901149(+) A-G intron -    22484847 chr20:3901239(+) A-G intron -    22484847 chr20:3901327(+) A-G intron -    22484847 chr20:3901336(+) A-G intron -    22484847 chr20:3901339(+) A-G intron -    22484847 chr20:3901341(+) A-G intron -    22484847 chr20:3901361(+) A-G intron -    22484847 chr20:3901371(+) A-G intron -    22484847 chr20:3901413(+) A-G intron -    22484847 chr20:3901482(+) A-G intron -    22484847 chr20:3901483(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	PANK2	chr20:3869526-3869527(+) m6A 5'UTR       22608085 chr20:3869539-3869540(+) m6A 5'UTR       22608085 chr20:3869840-3869841(+) m6A CDS//intron       25456834 chr20:3870044-3870045(+) m6A 5'UTR//CDS//intron       24209618//25456834 chr20:3870207-3870208(+) m6A CDS//intron       24209618 chr20:3888588-3888589(+) m6A 5'UTR//CDS//exon       - chr20:3888604-3888605(+) m6A 5'UTR//CDS//exon       - chr20:3888630-3888631(+) m6A 5'UTR//CDS//exon       22608085 chr20:3888638-3888639(+) m6A 5'UTR//CDS//exon       24284625//24209618//24981863//22608085 chr20:3888758-3888759(+) m6A 5'UTR//CDS//exon       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr20:3888851-3888852(+) m6A CDS//intron       24284625//25456834//24981863//26404942//22608085 chr20:3889357-3889358(+) m6A exon//intron       24981863//22608085 chr20:3889537-3889538(+) m6A exon//intron       24981863//22608085 chr20:3889547-3889548(+) m6A exon//intron       24981863//22608085 chr20:3891246-3891247(+) m6A 3'UTR//5'UTR//CDS//exon       24981863//22608085 chr20:3891255-3891256(+) m6A 3'UTR//5'UTR//CDS//exon       24981863//22608085 chr20:3891335-3891336(+) m6A 3'UTR//5'UTR//CDS//exon       24981863//22608085 chr20:3891407-3891408(+) m6A 3'UTR//5'UTR//CDS//exon       27773535//22608085 chr20:3893117-3893118(+) m6A 3'UTR//5'UTR//CDS//exon       27773535 chr20:3899436-3899437(+) m6A 3'UTR//CDS       24981863//22608085 chr20:3903967-3903968(+) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22608085 chr20:3903990-3903991(+) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22608085 chr20:3904009-3904010(+) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22608085 chr20:3904041-3904042(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085 chr20:3904056-3904057(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085 chr20:3904140-3904141(+) m6A 3'UTR       27773535//22608085 chr20:3904549-3904550(+) m6A 3'UTR       - chr20:3904593-3904594(+) m6A 3'UTR       - chr20:3904643-3904644(+) m6A 3'UTR       - chr20:3905663-3905664(+) m6A 3'UTR//intron       25456834 chr20:3905720-3905721(+) m6A 3'UTR//intron       25456834 chr20:3905726-3905727(+) m6A 3'UTR//intron       25456834 chr20:3905733-3905734(+) m6A 3'UTR//intron       25456834 chr20:3905835-3905836(+) m6A 3'UTR//intron       25456834 chr20:3906671-3906672(+) m6A 3'UTR//intron       24981863 chr20:3906818-3906819(+) m6A 3'UTR//intron       24981863 chr20:3906834-3906835(+) m6A 3'UTR//intron       24284625//24981863 chr20:3909943-3909944(+) m6A exon//intron       - chr20:3910030-3910031(+) m6A exon//intron       - chr20:3910083-3910084(+) m6A exon//intron       - chr20:3910094-3910095(+) m6A exon//intron       - chr20:3910117-3910118(+) m6A exon//intron       - chr20:3910190-3910191(+) m6A exon//intron       - chr20:3910205-3910206(+) m6A exon//intron       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	PANK2	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HCC cell line (HepG2)     - Exosome Blood     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells     - Ribosome HEK-293 cells     22199352

Related Drug Information:

Resource	Symbol	Drug Name	PubChem ID
RNAactDrug	ebv-miR-BART20-3p	Crizotinib       11626560

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART20-3p
Interactor2: PANK2

Evidence Support:

Prediction-Evidence	cRep//miRanda
Support Database	RepTar//VmiReg