Basic Information:

  VIRBase ID:  

VHID00390392

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART20-3p:  MIMAT0003720          CMTM6:  NM_017801     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART20-3p	CMTM6
miRBase Accession/Entrez ID	MIMAT0003720	54918
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	CKLFSF6//PRO2219

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	CMTM6	chr3:32540102(-) A-I      intronic chr3:32540088(-) A-I      intronic chr3:32540148(-) A-I      intronic chr3:32540210(-) A-I      intronic chr3:32537829(-) A-I      intronic chr3:32537652(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	CMTM6	chr3:32537652(-) A-G intron -    22484847 chr3:32537829(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CMTM6	chr3:32523551-32523552(-) m6A 3'UTR       26404942 chr3:32523583-32523584(-) m6A 3'UTR       26404942 chr3:32524563-32524564(-) Y 3'UTR       26075521 chr3:32524627-32524628(-) m6A 3'UTR       24981863 chr3:32524648-32524649(-) m6A 3'UTR       24981863 chr3:32524662-32524663(-) m6A 3'UTR       24981863 chr3:32524678-32524679(-) m6A 3'UTR       24981863 chr3:32525237-32525238(-) m6A 3'UTR//exon       26404942 chr3:32525355-32525356(-) m6A 3'UTR//exon       24981863//26404942 chr3:32525448-32525449(-) m6A 3'UTR//exon       24981863//26404942//22608085 chr3:32525502-32525503(-) m6A CDS//exon       24284625//24981863//26404942//22608085 chr3:32544196-32544197(-) m6A CDS//exon       25456834//27773536 chr3:32544301-32544302(-) m6A 5'UTR       25456834//24981863//27371828//27773536

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	CMTM6	Chromatin K562 cells     - Exosome Blood     - Nucleoplasm K562 cells     - Nucleus HeLa-S3 cells     - Ribosome Colon cancer cells     24393600

Related Drug Information:

Resource	Symbol	Drug Name	PubChem ID
RNAactDrug	ebv-miR-BART20-3p	Crizotinib       11626560

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART20-3p
Interactor2: CMTM6

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg