Detail Information

Basic Information:


  VIRBase ID:  

VHID00390014

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART20-3p:           CLIP3:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART20-3p CLIP3
miRBase
Accession/Entrez ID		 MIMAT0003720 25999
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - CLIPR-59//CLIPR59//RSNL1

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR CLIP3
chr19:36522015(-) A-I      intronic
chr19:36521991(-) A-I      intronic
chr19:36522026(-) A-I      intronic
chr19:36522029(-) A-I      intronic
chr19:36522023(-) A-I      intronic
chr19:36507317(-) A-I      intronic
chr19:36507347(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED CLIP3
chr19:36514012(-) A-I intron -    22327324

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase CLIP3
chr19:36505606-36505607(-) m6A 3'UTR       27371828
chr19:36505642-36505643(-) m6A 3'UTR       27371828
chr19:36505665-36505666(-) m6A 3'UTR       27371828
chr19:36505693-36505694(-) m6A 3'UTR       -
chr19:36506145-36506146(-) m6A 3'UTR       27773535
chr19:36506182-36506183(-) m6A 3'UTR       27773535
chr19:36506205-36506206(-) m6A 3'UTR       27773535
chr19:36506221-36506222(-) m6A 3'UTR       27773535
chr19:36506250-36506251(-) m6A 3'UTR       27773535
chr19:36506300-36506301(-) m6A 3'UTR       27773535
chr19:36506359-36506360(-) m6A 3'UTR       27773535
chr19:36506396-36506397(-) m6A 3'UTR       27773535
chr19:36506422-36506423(-) m6A 3'UTR       27773535
chr19:36506430-36506431(-) m6A 3'UTR       27773535
chr19:36506469-36506470(-) m6A 3'UTR       27773535
chr19:36506496-36506497(-) m6A 3'UTR       27773535
chr19:36506515-36506516(-) m6A 3'UTR       27773535
chr19:36506614-36506615(-) m6A 3'UTR       27773535
chr19:36506649-36506650(-) m6A 3'UTR       24981863//27773535
chr19:36506678-36506679(-) m6A 3'UTR       24981863//27773535
chr19:36506694-36506695(-) m6A 3'UTR       24981863//27773535
chr19:36506726-36506727(-) m6A 3'UTR       24209618//24981863//27773535
chr19:36506873-36506874(-) m6A 3'UTR       24209618//24981863//27773535
chr19:36506947-36506948(-) m6A 3'UTR       24209618//27773535
chr19:36507034-36507035(-) m6A 3'UTR       27773535//27371828
chr19:36507049-36507050(-) m6A 3'UTR       27773535//27371828
chr19:36523184-36523185(-) m6A CDS//exon       24209618//25456834//27371828
chr19:36523249-36523250(-) m6A CDS//exon       24209618//25456834//27371828
chr19:36523261-36523262(-) m6A 5'UTR//exon       24209618//25456834//24981863//27371828
chr19:36523363-36523364(-) m6A 5'UTR//intron       27371828
chr19:36523559-36523560(-) m6A 5'UTR//intron       -

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate CLIP3
Chromatin K562 cells     -
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells     -

Related Drug Information:


Resource Symbol Drug Name PubChem ID
RNAactDrug ebv-miR-BART20-3p
Crizotinib       11626560

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART20-3p
Interactor2: CLIP3

Evidence Support:


Prediction-Evidence miRanda//Targetscan
Support Database VmiReg

Starting a new search, please wait ...