Detail Information

Basic Information:


  VIRBase ID:  

VHID00389520

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART20-3p:           CTDSP2:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART20-3p CTDSP2
miRBase
Accession/Entrez ID		 MIMAT0003720 10106
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - OS4//PSR2//SCP2

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR CTDSP2
chr12:58225150(-) A-I      intronic
chr12:58224660(-) A-I      intronic
chr12:58224656(-) A-I      intronic
chr12:58225136(-) A-I      intronic
chr12:58224559(-) A-I      intronic
chr12:58224713(-) A-I      intronic
chr12:58224707(-) A-I      intronic
chr12:58237976(-) A-I      intronic
chr12:58225067(-) A-I      intronic
chr12:58224704(-) A-I      intronic
chr12:58230403(-) A-I      intronic
chr12:58224561(-) A-I      intronic
chr12:58224628(-) A-I      intronic
chr12:58224637(-) A-I      intronic
chr12:58225073(-) A-I      intronic
chr12:58225154(-) A-I      intronic
chr12:58228058(-) A-I      intronic
chr12:58229198(-) A-I      intronic
chr12:58224719(-) A-I      intronic
chr12:58225153(-) A-I      intronic
chr12:58228023(-) A-I      intronic
chr12:58229072(-) A-I      intronic
chr12:58234306(-) A-I      intronic
chr12:58229235(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED CTDSP2
chr12:58224713(-) A-G intron -    22484847
chr12:58224719(-) A-G intron -    22484847
chr12:58228906(-) G-T intron -    22484847
chr12:58230403(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase CTDSP2
chr12:58214835-58214836(-) m6A 3'UTR       27773535
chr12:58214855-58214856(-) m6A 3'UTR       27773535
chr12:58214958-58214959(-) m6A 3'UTR       27773535
chr12:58214983-58214984(-) m6A 3'UTR       27773535
chr12:58215056-58215057(-) m6A 3'UTR       27773535
chr12:58215146-58215147(-) m6A 3'UTR       27773535
chr12:58215170-58215171(-) m6A 3'UTR       27773535
chr12:58216217-58216218(-) m6A 3'UTR       24284625
chr12:58216360-58216361(-) m6A 3'UTR       24284625
chr12:58216496-58216497(-) m6A 3'UTR       24284625//24981863
chr12:58216586-58216587(-) m6A 3'UTR       24284625//24981863
chr12:58216638-58216639(-) m6A 3'UTR       24284625//24209618//24981863//22608085
chr12:58216678-58216679(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22608085
chr12:58216819-58216820(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr12:58216831-58216832(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr12:58216861-58216862(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr12:58216975-58216976(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr12:58216988-58216989(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr12:58216998-58216999(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr12:58217066-58217067(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr12:58217072-58217073(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr12:58217118-58217119(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr12:58217210-58217211(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr12:58217241-58217242(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr12:58217272-58217273(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr12:58217345-58217346(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr12:58217460-58217461(-) m6A 3'UTR//CDS//exon       24284625//24209618//27773535//27371828//22575960
chr12:58217475-58217476(-) m6A 3'UTR//CDS//exon       24284625//27773535
chr12:58217726-58217727(-) m6A 3'UTR//CDS//exon       24284625//27773535
chr12:58217739-58217740(-) m6A 3'UTR//CDS//exon       24284625//27773535
chr12:58217750-58217751(-) m6A 3'UTR//CDS//exon//intron       24284625//27773535
chr12:58217771-58217772(-) m6A 3'UTR//CDS//exon//intron       24284625
chr12:58217843-58217844(-) m6A 3'UTR//CDS//exon//intron       24284625
chr12:58217852-58217853(-) m6A 3'UTR//CDS//exon//intron       24284625
chr12:58240212-58240213(-) m6A CDS       24209618
chr12:58240340-58240341(-) m6A 5'UTR       24209618//27371828//27773536
chr12:58240473-58240474(-) m6A 5'UTR       24981863//27371828//27773536
chr12:58240479-58240480(-) m6A 5'UTR       24981863//27371828//27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate CTDSP2
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)     -

Related Drug Information:


Resource Symbol Drug Name PubChem ID
RNAactDrug ebv-miR-BART20-3p
Crizotinib       11626560

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART20-3p
Interactor2: CTDSP2

Evidence Support:


Prediction-Evidence miRanda//PITA//Targetscan
Support Database VmiReg

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