Basic Information:

  VIRBase ID:  

VHID00389165

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART20-3p:  MIMAT0003720          ELL:  NM_006532     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART20-3p	ELL
miRBase Accession/Entrez ID	MIMAT0003720	8178
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	C19orf17//ELL1//MEN//PPP1R68

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	ELL	chr19:18564460(-) A-I      intronic chr19:18628135(-) A-I      intronic chr19:18564536(-) A-I      intronic chr19:18564473(-) A-I      intronic chr19:18564547(-) A-I      intronic chr19:18564548(-) A-I      intronic chr19:18602166(-) A-I      intronic chr19:18564556(-) A-I      intronic chr19:18566800(-) A-I      intronic chr19:18566820(-) A-I      intronic chr19:18566825(-) A-I      intronic chr19:18602195(-) A-I      intronic chr19:18602118(-) A-I      intronic chr19:18602124(-) A-I      intronic chr19:18602142(-) A-I      intronic chr19:18602155(-) A-I      intronic chr19:18564535(-) A-I      intronic chr19:18574996(-) A-I      intronic chr19:18564532(-) A-I      intronic chr19:18564505(-) A-I      intronic chr19:18602126(-) A-I      intronic chr19:18593375(-) A-I      intronic chr19:18591716(-) A-I      intronic chr19:18591626(-) A-I      intronic chr19:18591620(-) A-I      intronic chr19:18573371(-) A-I      intronic chr19:18564583(-) A-I      intronic chr19:18563890(-) A-I      intronic chr19:18563899(-) A-I      intronic chr19:18583037(-) A-I      intronic chr19:18628661(-) A-I      intronic chr19:18628340(-) A-I      intronic chr19:18628293(-) A-I      intronic chr19:18628187(-) A-I      intronic chr19:18602681(-) A-I      intronic chr19:18602651(-) A-I      intronic chr19:18602559(-) A-I      intronic chr19:18602553(-) A-I      intronic chr19:18602545(-) A-I      intronic chr19:18602182(-) A-I      intronic chr19:18602167(-) A-I      intronic chr19:18591604(-) A-I      intronic chr19:18591547(-) A-I      intronic chr19:18602122(-) A-I      intronic chr19:18602111(-) A-I      intronic chr19:18601922(-) A-I      intronic chr19:18595412(-) A-I      intronic chr19:18593858(-) A-I      intronic chr19:18593435(-) A-I      intronic chr19:18593429(-) A-I      intronic chr19:18564500(-) A-I      intronic chr19:18564496(-) A-I      intronic chr19:18564489(-) A-I      intronic chr19:18564465(-) A-I      intronic chr19:18564021(-) A-I      intronic chr19:18563967(-) A-I      intronic chr19:18573405(-) A-I      intronic chr19:18575024(-) A-I      intronic chr19:18575170(-) A-I      intronic chr19:18582073(-) A-I      intronic chr19:18582076(-) A-I      intronic chr19:18582085(-) A-I      intronic chr19:18582329(-) A-I      intronic chr19:18582330(-) A-I      intronic chr19:18582884(-) A-I      intronic chr19:18582897(-) A-I      intronic chr19:18582910(-) A-I      intronic chr19:18582913(-) A-I      intronic chr19:18573350(-) A-I      intronic chr19:18573317(-) A-I      intronic chr19:18573283(-) A-I      intronic chr19:18566807(-) A-I      intronic chr19:18565161(-) A-I      intronic chr19:18565145(-) A-I      intronic chr19:18565135(-) A-I      intronic chr19:18565120(-) A-I      intronic chr19:18565065(-) A-I      intronic chr19:18564646(-) A-I      intronic chr19:18583015(-) A-I      intronic chr19:18573396(-) A-I      intronic chr19:18582964(-) A-I      intronic chr19:18582965(-) A-I      intronic chr19:18583010(-) A-I      intronic chr19:18583048(-) A-I      intronic chr19:18590356(-) A-I      intronic chr19:18590403(-) A-I      intronic chr19:18591467(-) A-I      intronic chr19:18591534(-) A-I      intronic chr19:18602214(-) A-I      intronic chr19:18575007(-) A-I      intronic chr19:18564544(-) A-I      intronic chr19:18573286(-) A-I      intronic chr19:18564543(-) A-I      intronic chr19:18628262(-) A-I      intronic chr19:18581965(-) A-I      intronic chr19:18558759(-) A-I      intronic chr19:18602064(-) A-I      intronic chr19:18582888(-) A-I      intronic chr19:18593236(-) A-I      intronic chr19:18564546(-) A-I      intronic chr19:18574380(-) A-I      intronic chr19:18628333(-) A-I      intronic chr19:18602701(-) A-I      intronic chr19:18602480(-) A-I      intronic chr19:18629382(-) A-I      intronic chr19:18602659(-) A-I      intronic chr19:18602136(-) A-I      intronic chr19:18573391(-) A-I      intronic chr19:18564654(-) A-I      intronic chr19:18602202(-) A-I      intronic chr19:18564550(-) A-I      intronic chr19:18629340(-) A-I      intronic chr19:18604996(-) A-I      intronic chr19:18564545(-) A-I      intronic chr19:18582378(-) A-I      intronic chr19:18591572(-) A-I      intronic chr19:18566741(-) A-I      intronic chr19:18591717(-) A-I      intronic chr19:18563960(-) A-I      intronic chr19:18593284(-) A-I      intronic chr19:18566824(-) A-I      intronic chr19:18629549(-) A-I      intronic chr19:18590262(-) A-I      intronic chr19:18575100(-) A-I      intronic chr19:18564528(-) A-I      intronic chr19:18582354(-) A-I      intronic chr19:18602605(-) A-I      intronic chr19:18593698(-) A-I      intronic chr19:18629489(-) A-I      intronic chr19:18629976(-) A-I      intronic chr19:18629574(-) A-I      intronic chr19:18628196(-) A-I      intronic chr19:18602542(-) A-I      intronic chr19:18582379(-) A-I      intronic chr19:18593290(-) A-I      intronic chr19:18582970(-) A-I      intronic chr19:18595199(-) A-I      intronic chr19:18582009(-) A-I      intronic chr19:18628223(-) A-I      intronic chr19:18583019(-) A-I      intronic chr19:18602119(-) A-I      intronic chr19:18595091(-) A-I      intronic chr19:18602053(-) A-I      intronic chr19:18593220(-) A-I      intronic chr19:18564605(-) A-I      intronic chr19:18564629(-) A-I      intronic chr19:18593794(-) A-I      intronic chr19:18574348(-) A-I      intronic chr19:18574378(-) A-I      intronic chr19:18566743(-) A-I      intronic chr19:18565430(-) A-I      intronic chr19:18628180(-) A-I      intronic chr19:18574432(-) A-I      intronic chr19:18596541(-) A-I      intronic chr19:18628453(-) A-I      intronic chr19:18602196(-) A-I      intronic chr19:18564491(-) A-I      intronic chr19:18564582(-) A-I      intronic chr19:18602583(-) A-I      intronic chr19:18602168(-) A-I      intronic chr19:18596607(-) A-I      intronic chr19:18565568(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	ELL	chr19:18602542(-) A-I intron -    22327324 chr19:18593792(-) A-G intron -    22484847 chr19:18593794(-) A-G intron -    22484847 chr19:18602542(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	ELL	chr19:18554227-18554228(-) m6A 3'UTR       - chr19:18554697-18554698(-) m6A 3'UTR       24284625 chr19:18554762-18554763(-) m6A 3'UTR       24284625//24981863 chr19:18554783-18554784(-) m6A 3'UTR       24284625//24981863 chr19:18554894-18554895(-) m6A 3'UTR       24284625 chr19:18554914-18554915(-) m6A 3'UTR       24284625 chr19:18555128-18555129(-) m6A 3'UTR       24284625//27773535 chr19:18555150-18555151(-) m6A 3'UTR       24284625//27773535 chr19:18555197-18555198(-) m6A 3'UTR       24284625//27773535 chr19:18555225-18555226(-) m6A 3'UTR       24284625//27773535 chr19:18555276-18555277(-) m6A 3'UTR       24284625//24981863 chr19:18555482-18555483(-) m6A 3'UTR//exon       24284625//25456834//24981863//27371828//27773536 chr19:18556077-18556078(-) m6A 3'UTR//CDS//exon       27773535 chr19:18556115-18556116(-) m6A exon//intron       27773535 chr19:18556146-18556147(-) m6A exon//intron       27773535 chr19:18557612-18557613(-) m6A 3'UTR//CDS//exon       24284625//25456834//27773535//27371828//27773536 chr19:18561294-18561295(-) m6A 3'UTR//CDS//exon       24284625//25456834//28052920//27773535//27371828//27773536//22608085 chr19:18561336-18561337(-) m6A 3'UTR//CDS       24284625//24209618//25456834//28052920//27773535//27371828//27773536//22608085 chr19:18561360-18561361(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22608085 chr19:18561381-18561382(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22608085 chr19:18561456-18561457(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085 chr19:18561522-18561523(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085 chr19:18561624-18561625(-) m6A 3'UTR//CDS       24284625//25456834//24981863//27371828//27773536 chr19:18561737-18561738(-) m6A 3'UTR//CDS       24284625 chr19:18562416-18562417(-) m6A 3'UTR//CDS       27773536 chr19:18569044-18569045(-) m6A 3'UTR//CDS       27773536 chr19:18569068-18569069(-) m6A 3'UTR//CDS       - chr19:18569095-18569096(-) m6A 3'UTR//CDS       - chr19:18572639-18572640(-) m6A 3'UTR//CDS       27371828//27773536 chr19:18576343-18576344(-) m6A 3'UTR//5'UTR//CDS       24284625//27773535//27371828 chr19:18576364-18576365(-) m6A 3'UTR//5'UTR//CDS       24284625//27773535//27371828 chr19:18581808-18581809(-) m6A CDS//intron       27773535//27371828 chr19:18583224-18583225(-) m6A exon//intron       27371828 chr19:18586646-18586647(-) m6A 5'UTR//intron       27371828 chr19:18632733-18632734(-) m6A CDS//exon       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	ELL	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Related Drug Information:

Resource	Symbol	Drug Name	PubChem ID
RNAactDrug	ebv-miR-BART20-3p	Crizotinib       11626560

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART20-3p
Interactor2: ELL

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Rep//Targetscan
Support Database	RepTar//VmiReg