Basic Information:

  VIRBase ID:  

VHID00388910

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART20-3p:  MIMAT0003720          SDC1:  NM_001006946     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART20-3p	SDC1
miRBase Accession/Entrez ID	MIMAT0003720	6382
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	CD138//SDC//SYND1//syndecan

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SDC1	chr2:20400736-20400737(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr2:20400889-20400890(-) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr2:20400898-20400899(-) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr2:20401167-20401168(-) m6A 3'UTR       24981863 chr2:20401185-20401186(-) m6A 3'UTR       24981863 chr2:20401197-20401198(-) m6A 3'UTR       24981863 chr2:20401271-20401272(-) m6A 3'UTR       24981863 chr2:20401327-20401328(-) m6A 3'UTR       - chr2:20401527-20401528(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27773536//22575960//22608085 chr2:20401568-20401569(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27773536//22575960//22608085 chr2:20401577-20401578(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27773536//22575960//22608085 chr2:20401590-20401591(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27773536//22575960//22608085 chr2:20401765-20401766(-) m6A 3'UTR       24284625//24209618//24981863//26404942 chr2:20401846-20401847(-) m6A 3'UTR       24284625//24209618//26404942//27773535 chr2:20401855-20401856(-) m6A 3'UTR       24284625//24209618//26404942//27773535 chr2:20401876-20401877(-) m6A 3'UTR       24209618//26404942//27773535 chr2:20401896-20401897(-) m6A 3'UTR       24209618//26404942//27773535 chr2:20401974-20401975(-) m6A 3'UTR       24284625//24209618//27773535 chr2:20402068-20402069(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//28052920//27773535//22575960//22608085 chr2:20402107-20402108(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27773536//22575960//22608085 chr2:20402185-20402186(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27773536//22575960//22608085 chr2:20402244-20402245(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27773536//22575960//22608085 chr2:20402300-20402301(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27773536//22575960//22608085 chr2:20402330-20402331(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27773536//22575960//22608085 chr2:20402459-20402460(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr2:20402547-20402548(-) m6A CDS//intron       24284625//24209618//24981863//27773535//22575960 chr2:20402583-20402584(-) m6A CDS//intron       24284625//24209618//24981863//27773535//22575960 chr2:20402867-20402868(-) m6A CDS//intron       24284625//24209618//27773535//27773536 chr2:20402918-20402919(-) m6A CDS//intron       24284625//27773535//27773536 chr2:20402967-20402968(-) m6A CDS//intron       24284625//27773535//27773536 chr2:20403693-20403694(-) m6A CDS//intron       24284625//26404942//27773536 chr2:20403710-20403711(-) m6A CDS//intron       24284625//26404942//27773536 chr2:20403733-20403734(-) m6A CDS       24284625//26404942//27773535//27773536 chr2:20403818-20403819(-) m6A CDS//exon       24284625//27773535//27773536 chr2:20403963-20403964(-) m6A 3'UTR//CDS//exon       24284625//27773536 chr2:20404000-20404001(-) m6A 3'UTR//CDS//exon       24284625//27773536 chr2:20404019-20404020(-) m6A 3'UTR//CDS//exon       24284625//27773536 chr2:20422995-20422996(-) m6A 3'UTR//exon//intron       24284625 chr2:20423010-20423011(-) m6A 3'UTR//exon//intron       24284625 chr2:20424695-20424696(-) m6A 5'UTR       24284625//24209618//25456834//24981863//27773536//22575960 chr2:20424741-20424742(-) m6A 5'UTR       24284625//24209618//25456834//24981863//27773536//22575960 chr2:20424762-20424763(-) m6A 5'UTR       24284625//24209618//25456834//24981863//27773536//22575960 chr2:20424776-20424777(-) m6A 5'UTR       24284625//24209618//25456834//24981863//27773536//22575960 chr2:20425074-20425075(-) m6A 5'UTR       24284625//24981863//27773536 chr2:20425090-20425091(-) m6A 5'UTR       24284625//24981863//27773536

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SDC1	Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleus HCC cell line (HepG2)     - Ribosome Colon cancer cells     24393600

Related Drug Information:

Resource	Symbol	Drug Name	PubChem ID
RNAactDrug	ebv-miR-BART20-3p	Crizotinib       11626560

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART20-3p
Interactor2: SDC1

Evidence Support:

Prediction-Evidence	cRep//PITA
Support Database	RepTar//VmiReg