Basic Information:

  VIRBase ID:  

VHID00388889

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART20-3p:  MIMAT0003720          RPS23:  NM_001025     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART20-3p	RPS23
miRBase Accession/Entrez ID	MIMAT0003720	6228
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	BTDD//MABAS//MCINS//PAMAS//S23//uS12

RNA Editing:

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	RPS23	chr5:81572664(-) G-T intron -    22484847 chr5:81572761(-) G-C intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	RPS23	chr5:81569306-81569307(-) m6A 3'UTR       27773535 chr5:81569338-81569339(-) m6A 3'UTR       27773535 chr5:81569386-81569387(-) m6A 3'UTR       27773535 chr5:81569419-81569420(-) m6A 3'UTR       27773535 chr5:81569445-81569446(-) m6A 3'UTR       27773535 chr5:81569471-81569472(-) m6A 3'UTR       27773535 chr5:81569491-81569492(-) m6A 3'UTR       24981863//27773535 chr5:81569777-81569778(-) m6A 3'UTR       27773535//22608085 chr5:81569818-81569819(-) m6A 3'UTR       24981863//27773535//22608085 chr5:81569825-81569826(-) m6A 3'UTR       24981863//27773535//22608085 chr5:81569876-81569877(-) m6A 3'UTR       24981863//27773535//22608085 chr5:81569900-81569901(-) m6A 3'UTR       24981863//27773535//22608085 chr5:81569908-81569909(-) m6A 3'UTR       24981863//27773535//22608085 chr5:81569914-81569915(-) m6A 3'UTR       24981863//27773535//22608085 chr5:81569931-81569932(-) m6A 3'UTR       24981863//27773535//22608085 chr5:81569968-81569969(-) m6A 3'UTR       24981863//27773535//22608085 chr5:81570003-81570004(-) m6A 3'UTR       24981863//22608085 chr5:81570048-81570049(-) m6A 3'UTR       24981863 chr5:81570295-81570296(-) m6A 3'UTR       27773535 chr5:81571778-81571779(-) m6A 3'UTR//intron       24981863//27773535 chr5:81571793-81571794(-) m6A 3'UTR//intron       24981863//27773535 chr5:81573456-81573457(-) m6A 3'UTR//intron       22575960 chr5:81573462-81573463(-) m6A 3'UTR//intron       22575960 chr5:81573600-81573601(-) m6A CDS//exon       26404942//22575960 chr5:81573619-81573620(-) m6A CDS//exon       26404942//22575960 chr5:81573622-81573623(-) Gm CDS//exon       - chr5:81573657-81573658(-) m6A CDS//exon       26404942//22575960 chr5:81573691-81573692(-) m6A exon//intron       22575960 chr5:81573720-81573721(-) m6A exon//intron       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	RPS23	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Membrane K562 cells     - Nucleoplasm K562 cells     -

Related Drug Information:

Resource	Symbol	Drug Name	PubChem ID
RNAactDrug	ebv-miR-BART20-3p	Crizotinib       11626560

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART20-3p
Interactor2: RPS23

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Rep//Targetscan
Support Database	RepTar//VmiReg