Basic Information:

  VIRBase ID:  

VHID00388268

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART20-3p:  MIMAT0003720          ELK3:  NM_005230     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART20-3p	ELK3
miRBase Accession/Entrez ID	MIMAT0003720	2004
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	ERP//NET//SAP-2//SAP2

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	ELK3	chr12:96596366(+) A-I      intronic chr12:96626229(+) A-I      intronic chr12:96626255(+) A-I      intronic chr12:96626270(+) A-I      intronic chr12:96626225(+) A-I      intronic chr12:96626227(+) A-I      intronic chr12:96626228(+) A-I      intronic chr12:96625400(+) A-I      intronic chr12:96608111(+) A-I      intronic chr12:96594405(+) A-I      intronic chr12:96607573(+) A-I      intronic chr12:96607571(+) A-I      intronic chr12:96621942(+) A-I      intronic chr12:96607629(+) A-I      intronic chr12:96594425(+) A-I      intronic chr12:96607954(+) A-I      intronic chr12:96608169(+) A-I      intronic chr12:96596422(+) A-I      intronic chr12:96608155(+) A-I      intronic chr12:96619799(+) A-I      intronic chr12:96658483(+) A-I      intronic chr12:96658448(+) A-I      intronic chr12:96658449(+) A-I      intronic chr12:96595322(+) A-I      intronic chr12:96626188(+) A-I      intronic chr12:96619894(+) A-I      intronic chr12:96621842(+) A-I      intronic chr12:96594496(+) A-I      intronic chr12:96625436(+) A-I      intronic chr12:96597682(+) A-I      intronic chr12:96658533(+) A-I      intronic chr12:96595244(+) A-I      intronic chr12:96658352(+) A-I      intronic chr12:96607621(+) A-I      intronic chr12:96595167(+) A-I      intronic chr12:96657946(+) A-I      intronic chr12:96607953(+) A-I      intronic chr12:96597701(+) A-I      intronic chr12:96659311(+) A-I      intronic chr12:96656079(+) A-I      intronic chr12:96611605(+) A-I      intronic chr12:96659343(+) A-I      intronic chr12:96609429(+) A-I      intronic chr12:96622117(+) A-I      intronic chr12:96626449(+) A-I      intronic chr12:96637501(+) A-I      intronic chr12:96626433(+) A-I      intronic chr12:96607633(+) A-I      intronic chr12:96655930(+) A-I      intronic chr12:96657965(+) A-I      intronic chr12:96659414(+) A-I      intronic chr12:96631466(+) A-I      intronic chr12:96658455(+) A-I      intronic chr12:96625410(+) A-I      intronic chr12:96611601(+) A-I      intronic chr12:96657819(+) A-I      intronic chr12:96608179(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	ELK3	chr12:96657847(+) T-C intron -    22484847 chr12:96657852(+) T-C intron -    22484847 chr12:96657925(+) T-C intron -    22484847 chr12:96657940(+) T-C intron -    22484847 chr12:96658014(+) T-C intron -    22484847 chr12:96658395(+) T-C intron -    22484847 chr12:96658477(+) T-C intron -    22484847 chr12:96658525(+) T-C intron -    22484847 chr12:96658549(+) T-C intron -    22484847 chr12:96594496(+) A-G intron -    22484847 chr12:96647891(+) T-C intron -    22484847 chr12:96655960(+) T-C intron -    22484847 chr12:96657840(+) T-C intron -    22484847 chr12:96657878(+) T-C intron -    22484847 chr12:96657883(+) T-C intron -    22484847 chr12:96657921(+) T-C intron -    22484847 chr12:96657930(+) T-C intron -    22484847 chr12:96658018(+) T-C intron -    22484847 chr12:96658022(+) T-C intron -    22484847 chr12:96658366(+) T-C intron -    22484847 chr12:96659229(+) T-C intron -    22484847 chr12:96659297(+) T-C intron -    22484847 chr12:96659298(+) T-C intron -    22484847 chr12:96659410(+) T-C intron -    22484847 chr12:96659451(+) T-C intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	ELK3	chr12:96588230-96588231(+) m6A 5'UTR       24981863 chr12:96588390-96588391(+) m6A 5'UTR       24981863 chr12:96617400-96617401(+) m6A CDS       24981863 chr12:96617422-96617423(+) m6A CDS       24981863 chr12:96617481-96617482(+) m6A CDS       24981863 chr12:96617492-96617493(+) m6A CDS       24981863 chr12:96617497-96617498(+) m6A CDS       24981863 chr12:96617507-96617508(+) m6A CDS       24981863//26404942 chr12:96640835-96640836(+) m6A CDS//intron       25456834//24981863//22608085 chr12:96640878-96640879(+) m6A CDS//intron       24209618//24981863//22608085 chr12:96640967-96640968(+) m6A CDS//intron       24209618//25456834//24981863//26404942 chr12:96641024-96641025(+) m6A CDS//intron       24284625//24209618//25456834//24981863//26404942 chr12:96641050-96641051(+) m6A CDS//intron       24284625//24209618//25456834//24981863//26404942 chr12:96641077-96641078(+) m6A CDS//intron       24284625//24209618//25456834//24981863//26404942 chr12:96641274-96641275(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22608085 chr12:96641333-96641334(+) m6A CDS//intron       24284625//24209618//25456834//24981863//26404942//22608085 chr12:96641353-96641354(+) m6A CDS//intron       24284625//24209618//25456834//24981863//26404942//22608085 chr12:96641388-96641389(+) m6A CDS//intron       24284625//24209618//25456834//24981863//26404942//22608085 chr12:96649264-96649265(+) m6A exon//intron       24284625//24209618//25456834//24981863 chr12:96649314-96649315(+) m6A exon//intron       24209618 chr12:96660908-96660909(+) m6A 3'UTR//CDS//exon       24284625//24209618//24981863 chr12:96660941-96660942(+) m6A 3'UTR//CDS//exon       24284625//24209618//24981863 chr12:96660980-96660981(+) m6A 3'UTR//exon       24284625//24209618//24981863//26404942 chr12:96660997-96660998(+) m6A 3'UTR//exon       24284625//24209618//24981863//26404942 chr12:96661041-96661042(+) m6A 3'UTR//exon       24209618//24981863//26404942 chr12:96661051-96661052(+) m6A 3'UTR//exon       24209618//24981863//26404942 chr12:96661118-96661119(+) m6A 3'UTR//exon       24209618//24981863 chr12:96662788-96662789(+) m6A 3'UTR       26404942

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	ELK3	Cytosol HeLa-S3 cells     - Exosome Blood     - Nucleoplasm K562 cells     -

Related Drug Information:

Resource	Symbol	Drug Name	PubChem ID
RNAactDrug	ebv-miR-BART20-3p	Crizotinib       11626560

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART20-3p
Interactor2: ELK3

Evidence Support:

Prediction-Evidence	miRanda//PITA
Support Database	VmiReg