Basic Information:

  VIRBase ID:  

VHID00387732

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART20-5p:  MIMAT0003719          NMNAT3:  NM_001320512     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART20-5p	NMNAT3
miRBase Accession/Entrez ID	MIMAT0003719	349565
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	FKSG76//PNAT-3//PNAT3

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	NMNAT3	chr3:139341465(-) A-I      intronic chr3:139341453(-) A-I      intronic chr3:139341494(-) A-I      intronic chr3:139341455(-) A-I      intronic chr3:139341460(-) A-I      intronic chr3:139341449(-) A-I      intronic chr3:139340426(-) A-I      intronic chr3:139340410(-) A-I      intronic chr3:139340352(-) A-I      intronic chr3:139342643(-) A-I      intronic chr3:139342651(-) A-I      intronic chr3:139301389(-) A-I      intronic chr3:139341320(-) A-I      intronic chr3:139340351(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	NMNAT3	chr3:139294983(-) A-I intron -    19478186 chr3:139341456(-) T-C intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	NMNAT3	chr3:139279336-139279337(-) m6A 3'UTR       22608085 chr3:139279346-139279347(-) m6A 3'UTR       22608085 chr3:139279359-139279360(-) m6A 3'UTR       22608085 chr3:139279841-139279842(-) m6A 3'UTR       25456834//24981863//22608085 chr3:139279859-139279860(-) m6A 3'UTR//CDS       25456834//24981863//22608085 chr3:139279924-139279925(-) m6A 3'UTR//CDS       25456834//24981863//22608085 chr3:139396663-139396664(-) m6A 5'UTR//exon       27773536 chr3:139396686-139396687(-) m6A 5'UTR//exon       27773536 chr3:139396727-139396728(-) m6A 5'UTR//exon       27773536

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	NMNAT3	Cytosol HCC cell line (HepG2)     - Exosome Blood     - Membrane HCC cell line (HepG2)     - Nucleolus K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART20-5p
Interactor2: NMNAT3

Evidence Support:

Prediction-Evidence	miRanda//PITA
Support Database	VmiReg