Basic Information:

  VIRBase ID:  

VHID00387592

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART20-5p:  MIMAT0003719          SNX33:  NM_153271     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART20-5p	SNX33
miRBase Accession/Entrez ID	MIMAT0003719	257364
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	SH3PX3//SH3PXD3C//SNX30

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SNX33	chr15:75940381-75940382(+) m6A 5'UTR       24284625//24209618//25456834//24981863 chr15:75940427-75940428(+) m6A 5'UTR       24284625//24209618//25456834//24981863 chr15:75940434-75940435(+) m6A 5'UTR       24284625//24209618//25456834//24981863 chr15:75940496-75940497(+) m6A 5'UTR       24284625//25456834//24981863 chr15:75940568-75940569(+) m6A 5'UTR       24284625//25456834//24981863 chr15:75940588-75940589(+) m6A 5'UTR       24284625//25456834//24981863 chr15:75940597-75940598(+) m6A 5'UTR       24284625//25456834//24981863 chr15:75940801-75940802(+) m6A 5'UTR       24284625//24209618//25456834//24981863 chr15:75940817-75940818(+) m6A 5'UTR       24284625//24209618//25456834//24981863 chr15:75940879-75940880(+) m6A 5'UTR       24284625//24209618//25456834//24981863//22608085 chr15:75940987-75940988(+) m6A 5'UTR       24284625//24209618//25456834//24981863//22608085 chr15:75941186-75941187(+) m6A 5'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr15:75941193-75941194(+) m6A 5'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr15:75941230-75941231(+) m6A 5'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr15:75941258-75941259(+) m6A 5'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr15:75941280-75941281(+) m6A 5'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr15:75941285-75941286(+) m6A 5'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr15:75941306-75941307(+) m6A 5'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr15:75941319-75941320(+) m6A 5'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr15:75941333-75941334(+) m6A 5'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr15:75941371-75941372(+) m6A 5'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr15:75941403-75941404(+) m6A 5'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr15:75941486-75941487(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr15:75941519-75941520(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr15:75941539-75941540(+) m6A CDS       24284625//25456834//24981863//22608085 chr15:75941570-75941571(+) m6A CDS       24284625//25456834//22608085 chr15:75941584-75941585(+) m6A CDS       24284625//25456834//22608085 chr15:75941756-75941757(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr15:75941945-75941946(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr15:75942073-75942074(+) m6A CDS       24284625//24209618//24981863//22608085 chr15:75942149-75942150(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22608085 chr15:75942159-75942160(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22608085 chr15:75942246-75942247(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr15:75942344-75942345(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr15:75942369-75942370(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr15:75942386-75942387(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr15:75942551-75942552(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr15:75942566-75942567(+) Am CDS       - chr15:75942578-75942579(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr15:75942657-75942658(+) m6A CDS//intron       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr15:75942734-75942735(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr15:75942851-75942852(+) m6A CDS//intron       24284625//24209618//24981863//22575960 chr15:75949425-75949426(+) m6A CDS       24284625 chr15:75949473-75949474(+) m6A CDS       24284625 chr15:75949529-75949530(+) m6A CDS       24284625//24981863 chr15:75949904-75949905(+) m6A 3'UTR       24284625 chr15:75949999-75950000(+) m6A 3'UTR       24284625 chr15:75950005-75950006(+) m6A 3'UTR       24284625 chr15:75950066-75950067(+) m6A 3'UTR       24284625 chr15:75950093-75950094(+) m6A 3'UTR       24284625//24981863 chr15:75950151-75950152(+) m6A 3'UTR       24284625//24981863 chr15:75950171-75950172(+) m6A 3'UTR       24284625//24981863 chr15:75950188-75950189(+) m6A 3'UTR       24284625//24981863 chr15:75950219-75950220(+) m6A 3'UTR       24284625//24981863 chr15:75950436-75950437(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr15:75950463-75950464(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr15:75950525-75950526(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22608085 chr15:75950591-75950592(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22608085 chr15:75950662-75950663(+) m6A 3'UTR       24284625//24209618//25456834//22575960 chr15:75950678-75950679(+) m6A 3'UTR       24284625//24209618//25456834//22575960 chr15:75951294-75951295(+) m6A 3'UTR       24284625 chr15:75951403-75951404(+) m6A 3'UTR       24284625 chr15:75951429-75951430(+) m6A 3'UTR       24284625//25456834 chr15:75951472-75951473(+) m6A 3'UTR       24284625//25456834//24981863 chr15:75951520-75951521(+) m6A 3'UTR       25456834//24981863 chr15:75951572-75951573(+) m6A 3'UTR       24209618//25456834//24981863 chr15:75951600-75951601(+) m6A 3'UTR       24209618//25456834//24981863 chr15:75951653-75951654(+) m6A 3'UTR       25456834//24981863 chr15:75951660-75951661(+) m6A 3'UTR       25456834//24981863 chr15:75951726-75951727(+) m6A 3'UTR       25456834 chr15:75951759-75951760(+) m6A 3'UTR       25456834 chr15:75952614-75952615(+) m6A 3'UTR       25456834 chr15:75952645-75952646(+) m6A 3'UTR       25456834 chr15:75952662-75952663(+) m6A 3'UTR       25456834 chr15:75952987-75952988(+) m6A 3'UTR       - chr15:75954051-75954052(+) m6A 3'UTR       25456834//24981863 chr15:75954091-75954092(+) m6A 3'UTR       25456834//24981863 chr15:75954097-75954098(+) m6A 3'UTR       25456834//24981863 chr15:75954138-75954139(+) m6A 3'UTR       24284625//24981863 chr15:75954212-75954213(+) m6A 3'UTR       24284625//24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SNX33	Exosome Blood     - Membrane HCC cell line (HepG2)     - Nucleoplasm K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART20-5p
Interactor2: SNX33

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg