Basic Information:

  VIRBase ID:  

VHID00387565

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.6055

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART20-5p:  MIMAT0003719          SEMA3D:  NM_152754     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART20-5p	SEMA3D
miRBase Accession/Entrez ID	MIMAT0003719	223117
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	coll-2//Sema-Z2

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SEMA3D	chr7:84713416(-) A-I      intronic chr7:84672628(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SEMA3D	chr7:84628563-84628564(-) m6A 3'UTR       27773535//22608085 chr7:84628578-84628579(-) m6A 3'UTR       27773535//22608085 chr7:84628621-84628622(-) m6A 3'UTR       27773535//22608085 chr7:84628638-84628639(-) m6A 3'UTR       27773535//22608085 chr7:84628712-84628713(-) m6A 3'UTR//exon       27773535//22608085 chr7:84628789-84628790(-) m6A CDS//exon       25456834//24981863//27773535//27773536//22608085 chr7:84628800-84628801(-) m6A CDS//exon       25456834//24981863//27773535//27773536//22608085 chr7:84628858-84628859(-) m6A CDS//exon       25456834//24981863//27773535//27773536//22608085 chr7:84628866-84628867(-) m6A CDS//exon       25456834//24981863//27773535//27773536//22608085 chr7:84628893-84628894(-) m6A CDS//exon       25456834//24981863//27773535//27773536//22608085 chr7:84628918-84628919(-) m6A CDS//exon       25456834//24981863//27773535//27773536//22608085 chr7:84628945-84628946(-) m6A CDS//exon       25456834//24981863//27773535//27773536//22608085 chr7:84629028-84629029(-) m6A CDS//exon       25456834//24981863//27773535//22608085 chr7:84816069-84816070(-) m6A 5'UTR       27773536

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SEMA3D	Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HeLa-S3 cells     - Exosome Blood     - Ribosome HEK-293 cells     22199352

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART20-5p
Interactor2: SEMA3D

Evidence Support:

Weak-Evidence	PAR-CLIP
Prediction-Evidence	cRep//miRanda//PARalyzer//Rep//Targetscan
Support Database	RepTar//ViRBase//VmiReg

References:

PMID	22100165	Target region	3'UTR
Source	RepTar//ViRBase//VmiReg	Interactor1 expression	None
Tissue or cell line	BC-1 cells	Interactor2 expression	None
Description	Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites.Clusters with seed matches to expressed miRNAs were considered candidate target sites. Of the clusters mapping to human 3'UTRs, 69% (BC-1) and 70% (BC-3) had seed matches to expressed miRNAs (Tables S6).Table S6A BC-1 derived 3'UTR clusters with seed matches to expressed miRNAs.