Detail Information

Basic Information:


  VIRBase ID:  

VHID00387362

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART20-5p:           NFAM1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART20-5p NFAM1
miRBase
Accession/Entrez ID		 MIMAT0003719 150372
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - CNAIP

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR NFAM1
chr22:42777195(-) A-I      3'UTR
chr22:42779465(-) A-I      3'UTR
chr22:42779466(-) A-I      3'UTR
chr22:42779576(-) A-I      3'UTR
chr22:42779509(-) A-I      3'UTR
chr22:42779502(-) A-I      3'UTR
chr22:42807151(-) A-I      intronic
chr22:42779626(-) A-I      3'UTR
chr22:42779635(-) A-I      3'UTR
chr22:42819056(-) A-I      intronic
chr22:42819062(-) A-I      intronic
chr22:42819037(-) A-I      intronic
chr22:42819036(-) A-I      intronic
chr22:42819010(-) A-I      intronic
chr22:42819007(-) A-I      intronic
chr22:42807126(-) A-I      intronic
chr22:42807139(-) A-I      intronic
chr22:42816137(-) A-I      intronic
chr22:42820309(-) A-I      intronic
chr22:42820914(-) A-I      intronic
chr22:42821065(-) A-I      intronic
chr22:42821072(-) A-I      intronic
chr22:42824559(-) A-I      intronic
chr22:42826209(-) A-I      intronic
chr22:42826206(-) A-I      intronic
chr22:42825510(-) A-I      intronic
chr22:42824576(-) A-I      intronic
chr22:42821088(-) A-I      intronic
chr22:42798939(-) A-I      intronic
chr22:42798940(-) A-I      intronic
chr22:42799049(-) A-I      intronic
chr22:42799110(-) A-I      intronic
chr22:42802878(-) A-I      intronic
chr22:42802879(-) A-I      intronic
chr22:42802886(-) A-I      intronic
chr22:42802919(-) A-I      intronic
chr22:42803010(-) A-I      intronic
chr22:42807154(-) A-I      intronic
chr22:42816240(-) A-I      intronic
chr22:42796618(-) A-I      intronic
chr22:42820402(-) A-I      intronic
chr22:42824572(-) A-I      intronic
chr22:42807127(-) A-I      intronic
chr22:42794516(-) A-I      intronic
chr22:42826267(-) A-I      intronic
chr22:42803153(-) A-I      intronic
chr22:42826222(-) A-I      intronic
chr22:42811414(-) A-I      intronic
chr22:42794515(-) A-I      intronic
chr22:42789300(-) A-I      intronic
chr22:42800739(-) A-I      intronic
chr22:42791449(-) A-I      intronic
chr22:42794557(-) A-I      intronic
chr22:42821217(-) A-I      intronic
chr22:42799064(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED NFAM1
chr22:42776588(-) A-I exon 3'UTR    15342557
chr22:42777105(-) A-I exon 3'UTR    15342557   //15258596
chr22:42777153(-) A-I exon 3'UTR    15342557
chr22:42777158(-) A-I exon 3'UTR    15342557   //15258596
chr22:42777161(-) A-I exon 3'UTR    15342557
chr22:42777186(-) A-I exon 3'UTR    15342557   //15258596
chr22:42777190(-) A-I exon 3'UTR    15342557
chr22:42777194(-) A-I exon 3'UTR    15342557   //15258596
chr22:42777244(-) A-I exon 3'UTR    15342557   //15258596
chr22:42777257(-) A-I exon 3'UTR    15342557   //15258596
chr22:42777269(-) A-I exon 3'UTR    15342557
chr22:42777866(-) A-I exon 3'UTR    15342557
chr22:42778210(-) A-I exon 3'UTR    15342557
chr22:42778662(-) A-I exon 3'UTR    15342557
chr22:42778774(-) A-I exon 3'UTR    15342557
chr22:42778776(-) A-I exon 3'UTR    15342557
chr22:42778789(-) A-I exon 3'UTR    15342557
chr22:42778837(-) A-I exon 3'UTR    15342557
chr22:42779018(-) A-I exon 3'UTR    15342557
chr22:42779432(-) A-I exon 3'UTR    15342557   //15258596
chr22:42779476(-) A-I exon 3'UTR    15342557
chr22:42779481(-) A-I exon 3'UTR    15342557
chr22:42779487(-) A-I exon 3'UTR    15342557   //15258596
chr22:42779490(-) A-I exon 3'UTR    15342557   //15258596
chr22:42779501(-) A-I exon 3'UTR    15342557   //15258596
chr22:42779507(-) A-I exon 3'UTR    15342557
chr22:42779511(-) A-I exon 3'UTR    15342557
chr22:42779514(-) A-I exon 3'UTR    15342557
chr22:42779515(-) A-I exon 3'UTR    15342557
chr22:42779539(-) A-I exon 3'UTR    15342557   //15258596
chr22:42779540(-) A-I exon 3'UTR    15342557   //15258596
chr22:42779551(-) A-I exon 3'UTR    15342557   //15258596
chr22:42779555(-) A-I exon 3'UTR    15342557   //15258596
chr22:42779560(-) A-I exon 3'UTR    15342557   //15258596
chr22:42779562(-) A-I exon 3'UTR    15342557   //15258596
chr22:42779578(-) A-I exon 3'UTR    15342557   //15258596
chr22:42779606(-) A-I exon 3'UTR    15342557   //15258596
chr22:42779609(-) A-I exon 3'UTR    15342557   //15258596
chr22:42779624(-) A-I exon 3'UTR    15342557   //15258596
chr22:42779637(-) A-I exon 3'UTR    15342557   //15258596
chr22:42779653(-) A-I exon 3'UTR    15342557   //15258596
chr22:42779694(-) A-I exon 3'UTR    15258596
chr22:42779699(-) A-I exon 3'UTR    15342557
chr22:42777105(-) A-G exon 3'UTR    22484847
chr22:42779637(-) A-G exon 3'UTR    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase NFAM1
chr22:42778578-42778579(-) m6A 3'UTR       27371828
chr22:42778589-42778590(-) m6A 3'UTR       27371828
chr22:42778632-42778633(-) m6A 3'UTR       27371828
chr22:42778664-42778665(-) m6A 3'UTR       27371828
chr22:42778681-42778682(-) m6A 3'UTR       25456834//27371828
chr22:42778709-42778710(-) m6A 3'UTR       25456834//27371828
chr22:42778731-42778732(-) m6A 3'UTR       25456834//27371828
chr22:42778780-42778781(-) m6A 3'UTR       27371828
chr22:42779270-42779271(-) m6A 3'UTR       -
chr22:42779285-42779286(-) m6A 3'UTR       -
chr22:42779939-42779940(-) m6A 3'UTR       -
chr22:42780402-42780403(-) m6A 3'UTR       27371828
chr22:42780408-42780409(-) m6A 3'UTR       27371828
chr22:42780437-42780438(-) m6A 3'UTR       25456834//27371828
chr22:42780542-42780543(-) m6A 3'UTR       25456834//27371828
chr22:42780561-42780562(-) m6A 3'UTR       27371828
chr22:42780574-42780575(-) m6A 3'UTR       27371828
chr22:42780590-42780591(-) m6A 3'UTR       27371828
chr22:42780607-42780608(-) m6A 3'UTR       27371828
chr22:42780759-42780760(-) m6A 3'UTR       27371828
chr22:42781065-42781066(-) m6A 3'UTR       -
chr22:42781098-42781099(-) m6A 3'UTR       -
chr22:42781124-42781125(-) m6A 3'UTR       -
chr22:42781193-42781194(-) m6A CDS       -
chr22:42807525-42807526(-) m6A CDS       -
chr22:42807543-42807544(-) m6A CDS       -
chr22:42807557-42807558(-) m6A CDS       -
chr22:42828355-42828356(-) m6A CDS       -

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate NFAM1
Exosome Blood     -

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART20-5p
Interactor2: NFAM1

Evidence Support:


Prediction-Evidence cRep//miRanda//PITA//Rep//Targetscan
Support Database RepTar//VmiReg

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