Basic Information:

  VIRBase ID:  

VHID00387203

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART20-5p:  MIMAT0003719          LYPLAL1:  NM_001300771     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART20-5p	LYPLAL1
miRBase Accession/Entrez ID	MIMAT0003719	127018
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	Q96AV0

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	LYPLAL1	chr1:219376238(+) A-I      intronic chr1:219376151(+) A-I      intronic chr1:219376043(+) A-I      intronic chr1:219376040(+) A-I      intronic chr1:219376145(+) A-I      intronic chr1:219376041(+) A-I      intronic chr1:219376157(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	LYPLAL1	chr1:219383941(+) A-G exon CDS    21725310 chr1:219372963(+) C-T intron -    22484847 chr1:219376151(+) A-G intron -    22484847 chr1:219376157(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	LYPLAL1	chr1:219347205-219347206(+) m6A 5'UTR       24981863 chr1:219347365-219347366(+) m6A exon//intron       24981863 chr1:219347628-219347629(+) m6A exon//intron       24981863 chr1:219348327-219348328(+) m6A exon//intron       24981863 chr1:219352498-219352499(+) m6A CDS//exon       24981863 chr1:219384923-219384924(+) m6A CDS//exon       27773535 chr1:219385001-219385002(+) m6A CDS//exon       24981863//27773535 chr1:219385011-219385012(+) m6A CDS//exon       24981863//27773535 chr1:219385060-219385061(+) m6A CDS//exon       24981863//27773535 chr1:219385152-219385153(+) Y 3'UTR//exon       26075521

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	LYPLAL1	Chromatin K562 cells     - Cytosol HCC cell line (HepG2)     - Exosome Blood     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART20-5p
Interactor2: LYPLAL1

Evidence Support:

Prediction-Evidence	miRanda//PITA//Targetscan
Support Database	VmiReg