Basic Information:

  VIRBase ID:  

VHID00387157

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART20-5p:  MIMAT0003719          TMEM45B:  NM_001331210     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART20-5p	TMEM45B
miRBase Accession/Entrez ID	MIMAT0003719	120224
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	TMEM45B	chr11:129729669(+) A-I      3'UTR chr11:129729636(+) A-I      3'UTR chr11:129729635(+) A-I      3'UTR chr11:129729604(+) A-I      3'UTR chr11:129729632(+) A-I      3'UTR chr11:129729504(+) A-I      3'UTR chr11:129729461(+) A-I      3'UTR chr11:129708110(+) A-I      intronic chr11:129729460(+) A-I      3'UTR chr11:129729622(+) A-I      3'UTR chr11:129696864(+) A-I      intronic chr11:129696829(+) A-I      intronic chr11:129690049(+) A-I      intronic chr11:129690044(+) A-I      intronic chr11:129689711(+) A-I      intronic chr11:129689552(+) A-I      intronic chr11:129689551(+) A-I      intronic chr11:129729716(+) A-I      3'UTR chr11:129729513(+) A-I      3'UTR chr11:129729696(+) A-I      3'UTR chr11:129708081(+) A-I      intronic chr11:129710659(+) A-I      intronic chr11:129710660(+) A-I      intronic chr11:129726181(+) A-I      intronic chr11:129729655(+) A-I      3'UTR chr11:129729512(+) A-I      3'UTR chr11:129729487(+) A-I      3'UTR chr11:129729563(+) A-I      3'UTR chr11:129729568(+) A-I      3'UTR chr11:129729558(+) A-I      3'UTR chr11:129729458(+) A-I      3'UTR chr11:129729659(+) A-I      3'UTR chr11:129729560(+) A-I      3'UTR chr11:129729562(+) A-I      3'UTR chr11:129729491(+) A-I      3'UTR chr11:129729561(+) A-I      3'UTR chr11:129712971(+) A-I      intronic chr11:129713019(+) A-I      intronic chr11:129702990(+) A-I      intronic chr11:129710705(+) A-I      intronic chr11:129689532(+) A-I      intronic chr11:129712974(+) A-I      intronic chr11:129713010(+) A-I      intronic

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	TMEM45B	Cytosol HCC cell line (HepG2)     - Exosome Blood     - Membrane HCC cell line (HepG2)     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART20-5p
Interactor2: TMEM45B

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg