Basic Information:

  VIRBase ID:  

VHID00386665

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART20-5p:  MIMAT0003719          UBA5:  NM_001321239     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART20-5p	UBA5
miRBase Accession/Entrez ID	MIMAT0003719	79876
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	DEE44//EIEE44//SCAR24//THIFP1//UBE1DC1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	UBA5	chr3:132393213(+) A-I      intronic chr3:132393156(+) A-I      intronic chr3:132393171(+) A-I      intronic chr3:132393206(+) A-I      intronic chr3:132393216(+) A-I      intronic chr3:132393394(+) A-I      intronic chr3:132392770(+) A-I      intronic chr3:132392674(+) A-I      intronic chr3:132392650(+) A-I      intronic chr3:132392638(+) A-I      intronic chr3:132392626(+) A-I      intronic chr3:132392375(+) A-I      intronic chr3:132392347(+) A-I      intronic chr3:132392286(+) A-I      intronic chr3:132392318(+) A-I      intronic chr3:132392771(+) A-I      intronic chr3:132393283(+) A-I      intronic chr3:132392747(+) A-I      intronic chr3:132392784(+) A-I      intronic chr3:132393453(+) A-I      intronic chr3:132393282(+) A-I      intronic chr3:132393380(+) A-I      intronic chr3:132393326(+) A-I      intronic chr3:132392454(+) A-I      intronic chr3:132392236(+) A-I      intronic chr3:132392266(+) A-I      intronic chr3:132393354(+) A-I      intronic chr3:132392651(+) A-I      intronic chr3:132392589(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	UBA5	chr3:132392648(+) A-I intron -    22327324 chr3:132392651(+) A-I intron -    22327324 chr3:132392777(+) A-I intron -    22327324 chr3:132393415(+) A-I intron -    22327324

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	UBA5	chr3:132378537-132378538(+) m6A 5'UTR//intron       24284625//24981863//27371828 chr3:132378570-132378571(+) m6A 5'UTR//intron       24284625//24981863//27371828 chr3:132378901-132378902(+) m6A 5'UTR//intron       24284625//24981863//27773535//22608085 chr3:132378953-132378954(+) m6A 5'UTR//intron       24284625//24981863//22608085 chr3:132378988-132378989(+) m6A 5'UTR//intron       24284625//25456834//24981863//22575960//22608085 chr3:132379012-132379013(+) m6A 5'UTR//intron       24284625//25456834//24981863//22575960//22608085 chr3:132379070-132379071(+) m6A 5'UTR//exon//intron       24284625//25456834//24981863//22575960//22608085 chr3:132379434-132379435(+) m6A 5'UTR//CDS//exon//intron       24209618//25456834//22575960 chr3:132384629-132384630(+) m6A 5'UTR//intron       24209618 chr3:132384644-132384645(+) m6A 5'UTR//intron       24209618 chr3:132394403-132394404(+) m6A exon//intron       24981863 chr3:132394420-132394421(+) m6A exon//intron       24981863 chr3:132394471-132394472(+) m6A CDS//exon       24981863//27773535 chr3:132394694-132394695(+) m6A CDS//exon//intron       24981863//27773535 chr3:132394723-132394724(+) m6A CDS//exon//intron       24981863//27773535 chr3:132395341-132395342(+) m6A 3'UTR//CDS//exon//intron       27773535 chr3:132395377-132395378(+) m6A 3'UTR//exon//intron       27773535 chr3:132395995-132395996(+) m6A 3'UTR//exon       27773535 chr3:132396032-132396033(+) m6A 3'UTR//exon       27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	UBA5	Chromatin K562 cells     - Exosome Blood     - Membrane K562 cells     - Nucleoplasm K562 cells     - Nucleus K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART20-5p
Interactor2: UBA5

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA
Support Database	RepTar//VmiReg