Basic Information:

  VIRBase ID:  

VHID00386546

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART20-5p:  MIMAT0003719          LPIN3:  NM_001301860     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART20-5p	LPIN3
miRBase Accession/Entrez ID	MIMAT0003719	64900
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	dJ620E11.2//LIPN3L//SMP2

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	LPIN3	chr20:39974447-39974448(+) m6A CDS       24284625 chr20:39974510-39974511(+) m6A CDS       24284625 chr20:39977416-39977417(+) m6A CDS       - chr20:39977464-39977465(+) m6A CDS       - chr20:39980526-39980527(+) m6A CDS       24284625 chr20:39980732-39980733(+) m6A CDS       24981863 chr20:39983360-39983361(+) m6A CDS//intron       24284625 chr20:39983480-39983481(+) m6A CDS       24981863 chr20:39984542-39984543(+) m6A CDS       24981863 chr20:39984576-39984577(+) m6A CDS       24981863 chr20:39985689-39985690(+) m6A CDS       24981863 chr20:39987426-39987427(+) m6A CDS//exon       24284625//24981863 chr20:39987486-39987487(+) m6A CDS//exon       24284625//24981863 chr20:39987501-39987502(+) m6A CDS//exon       24284625//25456834//24981863 chr20:39987506-39987507(+) m6A 3'UTR//exon       24284625//25456834//24981863 chr20:39987546-39987547(+) m6A 3'UTR       24284625//25456834//24981863 chr20:39987601-39987602(+) m6A 3'UTR       24284625//24209618//25456834//24981863 chr20:39987651-39987652(+) m6A 3'UTR       25456834//24981863 chr20:39988126-39988127(+) m6A 3'UTR       25456834//24981863 chr20:39988149-39988150(+) m6A 3'UTR       24284625//25456834//24981863 chr20:39988234-39988235(+) m6A 3'UTR       24284625//25456834//24981863//22575960//22608085 chr20:39988271-39988272(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr20:39988291-39988292(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr20:39988420-39988421(+) m6A 3'UTR       24284625//24981863 chr20:39988433-39988434(+) m6A 3'UTR       24284625//24981863 chr20:39988443-39988444(+) m6A 3'UTR       24284625//24981863 chr20:39988606-39988607(+) m6A 3'UTR       - chr20:39988685-39988686(+) m6A 3'UTR       24284625//25456834//24981863//22608085 chr20:39988706-39988707(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr20:39988749-39988750(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr20:39988774-39988775(+) m6A 3'UTR       24209618//25456834//24981863//22608085 chr20:39988797-39988798(+) m6A 3'UTR       24209618//25456834//24981863//22608085 chr20:39988815-39988816(+) m6A 3'UTR       24209618//25456834//24981863//22608085 chr20:39988874-39988875(+) m6A 3'UTR       - chr20:39989043-39989044(+) m6A 3'UTR       - chr20:39989071-39989072(+) m6A 3'UTR       - chr20:39989124-39989125(+) m6A 3'UTR       25456834//24981863//27773535//22608085 chr20:39989210-39989211(+) m6A 3'UTR       25456834//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	LPIN3	Chromatin K562 cells     - Cytoplasm Nasopharyngeal carcinoma cells     20498841 Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Insoluble cytoplasm HCC cell line (HepG2)     - Membrane HCC cell line (HepG2)     - Nucleolus K562 cells     - Nucleus Nasopharyngeal carcinoma cells     20498841 Nucleus HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART20-5p
Interactor2: LPIN3

Evidence Support:

Prediction-Evidence	cRep//miRanda//Targetscan
Support Database	RepTar//VmiReg