Detail Information

Basic Information:


  VIRBase ID:  

VHID00385995

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART20-5p:           HDAC7:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART20-5p HDAC7
miRBase
Accession/Entrez ID		 MIMAT0003719 51564
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - HD7//HD7A//HDAC7A

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR HDAC7
chr12:48200775(-) A-I      intronic
chr12:48200251(-) A-I      intronic
chr12:48200808(-) A-I      intronic
chr12:48200828(-) A-I      intronic
chr12:48200955(-) A-I      intronic
chr12:48200969(-) A-I      intronic
chr12:48200279(-) A-I      intronic
chr12:48200825(-) A-I      intronic
chr12:48200254(-) A-I      intronic
chr12:48200829(-) A-I      intronic
chr12:48203536(-) A-I      intronic
chr12:48203928(-) A-I      intronic
chr12:48203531(-) A-I      intronic
chr12:48200389(-) A-I      intronic
chr12:48203465(-) A-I      intronic
chr12:48200390(-) A-I      intronic
chr12:48203450(-) A-I      intronic
chr12:48203478(-) A-I      intronic
chr12:48200415(-) A-I      intronic
chr12:48200323(-) A-I      intronic
chr12:48201014(-) A-I      intronic
chr12:48203907(-) A-I      intronic
chr12:48200861(-) A-I      intronic
chr12:48200267(-) A-I      intronic
chr12:48200952(-) A-I      intronic
chr12:48200919(-) A-I      intronic
chr12:48199068(-) A-I      intronic
chr12:48200425(-) A-I      intronic
chr12:48200964(-) A-I      intronic
chr12:48209625(-) A-I      intronic
chr12:48200410(-) A-I      intronic
chr12:48200351(-) A-I      intronic
chr12:48200372(-) A-I      intronic
chr12:48200470(-) A-I      intronic
chr12:48200215(-) A-I      intronic
chr12:48200887(-) A-I      intronic
chr12:48200950(-) A-I      intronic
chr12:48200324(-) A-I      intronic
chr12:48209492(-) A-I      intronic
chr12:48200834(-) A-I      intronic
chr12:48200360(-) A-I      intronic
chr12:48203815(-) A-I      intronic
chr12:48200795(-) A-I      intronic
chr12:48198959(-) A-I      intronic
chr12:48190210(-) A-I      intronic
chr12:48203894(-) A-I      intronic
chr12:48200327(-) A-I      intronic
chr12:48200893(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED HDAC7
chr12:48200410(-) A-G intron -    22484847
chr12:48200215(-) A-G intron -    22484847
chr12:48200267(-) A-G intron -    22484847
chr12:48200351(-) A-G intron -    22484847
chr12:48200393(-) T-C intron -    22484847
chr12:48200415(-) A-G intron -    22484847
chr12:48200425(-) A-G intron -    22484847
chr12:48203815(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase HDAC7
chr12:48176530-48176531(-) m6A 3'UTR//exon       27773535
chr12:48176595-48176596(-) m6A 3'UTR//exon       27773535
chr12:48176750-48176751(-) m6A 3'UTR//exon       24284625//24981863//27773535
chr12:48176876-48176877(-) m6A 3'UTR//exon       24284625//27773535
chr12:48176914-48176915(-) m6A 3'UTR//exon       24284625//27773535
chr12:48177039-48177040(-) m6A 3'UTR//exon       24284625//25456834//24981863//27773535//27371828//22575960
chr12:48177202-48177203(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr12:48177214-48177215(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr12:48177252-48177253(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr12:48177259-48177260(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr12:48177312-48177313(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr12:48177327-48177328(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr12:48177378-48177379(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr12:48177427-48177428(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr12:48177437-48177438(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr12:48177501-48177502(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960
chr12:48177509-48177510(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960
chr12:48177584-48177585(-) m6A 3'UTR//exon       24284625//24209618//25456834//27371828
chr12:48177613-48177614(-) m6A 3'UTR//exon       24284625//25456834//27371828
chr12:48177638-48177639(-) m6A 3'UTR//CDS//exon       24284625//25456834//27371828
chr12:48177957-48177958(-) m6A 3'UTR//CDS//exon       27371828
chr12:48181533-48181534(-) m6A 3'UTR//CDS//exon       24284625
chr12:48181903-48181904(-) m6A 3'UTR//CDS//exon       -
chr12:48181916-48181917(-) m6A 3'UTR//CDS//exon       24284625
chr12:48182677-48182678(-) m6A CDS//intron       24284625
chr12:48187312-48187313(-) m6A 3'UTR//CDS//exon       24284625
chr12:48187356-48187357(-) m6A 3'UTR//CDS//exon       24284625
chr12:48188638-48188639(-) m6A 3'UTR//CDS//exon       27773536
chr12:48188652-48188653(-) m6A 3'UTR//CDS//exon       27773536
chr12:48189401-48189402(-) m6A 3'UTR//CDS//exon//intron       24284625
chr12:48189531-48189532(-) m6A 3'UTR//CDS//exon//intron       24284625
chr12:48190808-48190809(-) m6A CDS//exon//intron       24284625
chr12:48191169-48191170(-) m6A 3'UTR//CDS//exon       24284625//27773535//27371828
chr12:48191924-48191925(-) m6A CDS//exon       24284625//27773535//27371828
chr12:48191946-48191947(-) m6A CDS//exon       24284625//27773535//27371828
chr12:48192358-48192359(-) m6A CDS       24284625//27773535//27371828
chr12:48192387-48192388(-) m6A CDS       24284625//27371828
chr12:48192396-48192397(-) m6A CDS       24284625//27371828
chr12:48192424-48192425(-) m6A CDS       24284625//27371828
chr12:48192703-48192704(-) m6A CDS//intron       24284625//27371828//27773536
chr12:48192733-48192734(-) m6A 5'UTR//CDS//intron       24284625//27371828//27773536
chr12:48192796-48192797(-) m6A 5'UTR//intron       24209618//27371828
chr12:48214275-48214276(-) m6A 5'UTR//intron       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate HDAC7
Chromatin K562 cells     -
Cytosol K562 cells     -
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART20-5p
Interactor2: HDAC7

Evidence Support:


Prediction-Evidence miRanda//Targetscan
Support Database VmiReg

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