Detail Information

Basic Information:


  VIRBase ID:  

VHID00385379

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART20-5p:           TMED10:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART20-5p TMED10
miRBase
Accession/Entrez ID		 MIMAT0003719 10972
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - p23//P24(DELTA)//p24d1//S31I125//S31III125//Tmp-21-I//TMP21

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR TMED10
chr14:75604507(-) A-I      intronic
chr14:75604479(-) A-I      intronic
chr14:75604463(-) A-I      intronic
chr14:75604449(-) A-I      intronic
chr14:75604448(-) A-I      intronic
chr14:75616614(-) A-I      intronic
chr14:75599058(-) A-I      3'UTR
chr14:75599052(-) A-I      3'UTR
chr14:75599047(-) A-I      3'UTR
chr14:75599039(-) A-I      3'UTR
chr14:75599028(-) A-I      3'UTR
chr14:75599009(-) A-I      3'UTR
chr14:75599008(-) A-I      3'UTR
chr14:75599005(-) A-I      3'UTR
chr14:75604478(-) A-I      intronic
chr14:75604471(-) A-I      intronic
chr14:75604473(-) A-I      intronic
chr14:75616590(-) A-I      intronic
chr14:75616582(-) A-I      intronic
chr14:75611549(-) A-I      intronic
chr14:75630878(-) A-I      intronic
chr14:75630866(-) A-I      intronic
chr14:75630865(-) A-I      intronic
chr14:75630832(-) A-I      intronic
chr14:75611575(-) A-I      intronic
chr14:75616624(-) A-I      intronic
chr14:75616640(-) A-I      intronic
chr14:75616684(-) A-I      intronic
chr14:75611529(-) A-I      intronic
chr14:75604446(-) A-I      intronic
chr14:75630874(-) A-I      intronic
chr14:75609700(-) A-I      intronic
chr14:75609740(-) A-I      intronic
chr14:75609741(-) A-I      intronic
chr14:75609744(-) A-I      intronic
chr14:75609766(-) A-I      intronic
chr14:75609781(-) A-I      intronic
chr14:75609819(-) A-I      intronic
chr14:75610420(-) A-I      intronic
chr14:75610450(-) A-I      intronic
chr14:75610457(-) A-I      intronic
chr14:75610493(-) A-I      intronic
chr14:75610574(-) A-I      intronic
chr14:75611492(-) A-I      intronic
chr14:75611493(-) A-I      intronic
chr14:75611517(-) A-I      intronic
chr14:75611525(-) A-I      intronic
chr14:75611554(-) A-I      intronic
chr14:75612269(-) A-I      intronic
chr14:75612297(-) A-I      intronic
chr14:75612309(-) A-I      intronic
chr14:75612323(-) A-I      intronic
chr14:75612326(-) A-I      intronic
chr14:75612341(-) A-I      intronic
chr14:75612346(-) A-I      intronic
chr14:75612362(-) A-I      intronic
chr14:75612366(-) A-I      intronic
chr14:75612368(-) A-I      intronic
chr14:75612378(-) A-I      intronic
chr14:75612427(-) A-I      intronic
chr14:75613927(-) A-I      intronic
chr14:75614064(-) A-I      intronic
chr14:75614124(-) A-I      intronic
chr14:75615734(-) A-I      intronic
chr14:75615909(-) A-I      intronic
chr14:75616643(-) A-I      intronic
chr14:75616694(-) A-I      intronic
chr14:75618047(-) A-I      intronic
chr14:75618194(-) A-I      intronic
chr14:75619885(-) A-I      intronic
chr14:75620981(-) A-I      intronic
chr14:75621022(-) A-I      intronic
chr14:75621061(-) A-I      intronic
chr14:75621764(-) A-I      intronic
chr14:75621841(-) A-I      intronic
chr14:75621850(-) A-I      intronic
chr14:75621865(-) A-I      intronic
chr14:75623419(-) A-I      intronic
chr14:75623423(-) A-I      intronic
chr14:75625169(-) A-I      intronic
chr14:75625195(-) A-I      intronic
chr14:75625204(-) A-I      intronic
chr14:75625263(-) A-I      intronic
chr14:75625411(-) A-I      intronic
chr14:75625440(-) A-I      intronic
chr14:75625445(-) A-I      intronic
chr14:75625465(-) A-I      intronic
chr14:75625503(-) A-I      intronic
chr14:75625515(-) A-I      intronic
chr14:75625518(-) A-I      intronic
chr14:75625588(-) A-I      intronic
chr14:75625624(-) A-I      intronic
chr14:75627591(-) A-I      intronic
chr14:75628885(-) A-I      intronic
chr14:75628886(-) A-I      intronic
chr14:75628930(-) A-I      intronic
chr14:75629735(-) A-I      intronic
chr14:75629939(-) A-I      intronic
chr14:75629943(-) A-I      intronic
chr14:75630063(-) A-I      intronic
chr14:75630099(-) A-I      intronic
chr14:75630799(-) A-I      intronic
chr14:75630877(-) A-I      intronic
chr14:75636712(-) A-I      intronic
chr14:75636808(-) A-I      intronic
chr14:75636818(-) A-I      intronic
chr14:75639966(-) A-I      intronic
chr14:75639968(-) A-I      intronic
chr14:75641627(-) A-I      intronic
chr14:75615790(-) A-I      intronic
chr14:75609584(-) A-I      intronic
chr14:75606303(-) A-I      intronic
chr14:75639013(-) A-I      intronic
chr14:75603761(-) A-I      intronic
chr14:75616724(-) A-I      intronic
chr14:75607518(-) A-I      intronic
chr14:75604579(-) A-I      intronic
chr14:75607248(-) A-I      intronic
chr14:75640531(-) A-I      intronic
chr14:75620556(-) A-I      intronic
chr14:75615895(-) A-I      intronic
chr14:75640616(-) A-I      intronic
chr14:75625107(-) A-I      intronic
chr14:75611634(-) A-I      intronic
chr14:75617743(-) A-I      intronic
chr14:75604550(-) A-I      intronic
chr14:75607418(-) A-I      intronic
chr14:75607245(-) A-I      intronic
chr14:75641696(-) A-I      intronic
chr14:75612232(-) A-I      intronic
chr14:75607500(-) A-I      intronic
chr14:75604615(-) A-I      intronic
chr14:75610554(-) A-I      intronic
chr14:75615789(-) A-I      intronic
chr14:75636726(-) A-I      intronic
chr14:75619518(-) A-I      intronic
chr14:75631329(-) A-I      intronic
chr14:75603044(-) A-I      intronic
chr14:75613977(-) A-I      intronic
chr14:75604132(-) A-I      intronic
chr14:75623466(-) A-I      intronic
chr14:75611471(-) A-I      intronic
chr14:75639844(-) A-I      intronic
chr14:75606270(-) A-I      intronic
chr14:75606295(-) A-I      intronic
chr14:75606932(-) A-I      intronic
chr14:75606942(-) A-I      intronic
chr14:75607075(-) A-I      intronic
chr14:75607159(-) A-I      intronic
chr14:75607166(-) A-I      intronic
chr14:75607167(-) A-I      intronic
chr14:75607176(-) A-I      intronic
chr14:75607208(-) A-I      intronic
chr14:75607287(-) A-I      intronic
chr14:75607289(-) A-I      intronic
chr14:75607348(-) A-I      intronic
chr14:75607541(-) A-I      intronic
chr14:75609596(-) A-I      intronic
chr14:75619652(-) A-I      intronic
chr14:75611499(-) A-I      intronic
chr14:75621889(-) A-I      intronic
chr14:75620747(-) A-I      intronic
chr14:75607335(-) A-I      intronic
chr14:75640533(-) A-I      intronic
chr14:75606263(-) A-I      intronic
chr14:75604496(-) A-I      intronic
chr14:75620838(-) A-I      intronic
chr14:75615802(-) A-I      intronic
chr14:75625234(-) A-I      intronic
chr14:75603078(-) A-I      intronic
chr14:75612301(-) A-I      intronic
chr14:75620674(-) A-I      intronic
chr14:75606952(-) A-I      intronic
chr14:75632100(-) A-I      intronic
chr14:75625104(-) A-I      intronic
chr14:75638249(-) A-I      intronic
chr14:75614057(-) A-I      intronic
chr14:75625544(-) A-I      intronic
chr14:75613988(-) A-I      intronic
chr14:75603941(-) A-I      intronic
chr14:75612246(-) A-I      intronic
chr14:75630144(-) A-I      intronic
chr14:75620729(-) A-I      intronic
chr14:75639901(-) A-I      intronic
chr14:75604508(-) A-I      intronic
chr14:75606968(-) A-I      intronic
chr14:75615819(-) A-I      intronic
chr14:75606218(-) A-I      intronic
chr14:75616723(-) A-I      intronic
chr14:75611505(-) A-I      intronic
chr14:75603985(-) A-I      intronic
chr14:75614061(-) A-I      intronic
chr14:75610585(-) A-I      intronic
chr14:75611641(-) A-I      intronic
chr14:75616657(-) A-I      intronic
chr14:75630134(-) A-I      intronic
chr14:75639906(-) A-I      intronic
chr14:75616768(-) A-I      intronic
chr14:75603947(-) A-I      intronic
chr14:75606256(-) A-I      intronic
chr14:75639132(-) A-I      intronic
chr14:75602959(-) A-I      intronic
chr14:75611635(-) A-I      intronic
chr14:75602972(-) A-I      intronic
chr14:75607020(-) A-I      intronic
chr14:75609592(-) A-I      intronic
chr14:75629813(-) A-I      intronic
chr14:75624152(-) A-I      intronic
chr14:75636884(-) A-I      intronic
chr14:75611565(-) A-I      intronic
chr14:75625175(-) A-I      intronic
chr14:75616658(-) A-I      intronic
chr14:75611566(-) A-I      intronic
chr14:75603918(-) A-I      intronic
chr14:75640030(-) A-I      intronic
chr14:75623475(-) A-I      intronic
chr14:75639206(-) A-I      intronic
chr14:75639871(-) A-I      intronic
chr14:75604500(-) A-I      intronic
chr14:75625625(-) A-I      intronic
chr14:75624170(-) A-I      intronic
chr14:75602934(-) A-I      intronic
chr14:75604440(-) A-I      intronic
chr14:75630907(-) A-I      intronic
chr14:75625564(-) A-I      intronic
chr14:75625596(-) A-I      intronic
chr14:75607022(-) A-I      intronic
chr14:75616738(-) A-I      intronic
chr14:75611643(-) A-I      intronic
chr14:75625230(-) A-I      intronic
chr14:75610374(-) A-I      intronic
chr14:75625258(-) A-I      intronic
chr14:75607244(-) A-I      intronic
chr14:75621800(-) A-I      intronic
chr14:75636741(-) A-I      intronic
chr14:75619557(-) A-I      intronic
chr14:75607359(-) A-I      intronic
chr14:75615884(-) A-I      intronic
chr14:75620611(-) A-I      intronic
chr14:75632036(-) A-I      intronic
chr14:75604549(-) A-I      intronic
chr14:75617744(-) A-I      intronic
chr14:75609629(-) A-I      intronic
chr14:75606941(-) A-I      intronic
chr14:75616799(-) A-I      intronic
chr14:75603919(-) A-I      intronic
chr14:75639995(-) A-I      intronic
chr14:75625565(-) A-I      intronic
chr14:75609841(-) A-I      intronic
chr14:75604536(-) A-I      intronic
chr14:75610537(-) A-I      intronic
chr14:75604560(-) A-I      intronic
chr14:75619662(-) A-I      intronic
chr14:75615698(-) A-I      intronic
chr14:75616563(-) A-I      intronic
chr14:75630845(-) A-I      intronic
chr14:75604556(-) A-I      intronic
chr14:75598942(-) A-I      3'UTR
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED TMED10
chr14:75609629(-) A-I intron -    22327324
chr14:75599099(-) G-T exon 3'UTR    22484847
chr14:75599100(-) T-G exon 3'UTR    22484847
chr14:75603987(-) T-C intron -    22484847
chr14:75604536(-) A-G intron -    22484847
chr14:75604549(-) A-G intron -    22484847
chr14:75604550(-) A-G intron -    22484847
chr14:75604560(-) A-G intron -    22484847
chr14:75609584(-) A-G intron -    22484847
chr14:75609629(-) A-G intron -    22484847
chr14:75611565(-) A-G intron -    22484847
chr14:75625230(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase TMED10
chr14:75599700-75599701(-) m6A 3'UTR       26404942
chr14:75599797-75599798(-) m6A 3'UTR       24981863//26404942
chr14:75600864-75600865(-) m6A 3'UTR//exon       27773535
chr14:75600869-75600870(-) m6A 3'UTR//exon       27773535
chr14:75601012-75601013(-) m6A 3'UTR//exon       27773535
chr14:75601135-75601136(-) m6A 3'UTR//exon       -
chr14:75601261-75601262(-) m6A 3'UTR//exon       24284625//27773535//22575960
chr14:75601403-75601404(-) m6A 3'UTR//exon       24284625//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr14:75601441-75601442(-) m6A 3'UTR//exon       24284625//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr14:75601465-75601466(-) m6A 3'UTR//exon       24284625//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr14:75601541-75601542(-) m6A 3'UTR//exon       24284625//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr14:75601650-75601651(-) m6A 3'UTR//CDS//exon       24284625
chr14:75601699-75601700(-) m6A 3'UTR//CDS//exon       24284625
chr14:75602404-75602405(-) m6A exon//intron       24284625
chr14:75602533-75602534(-) m6A 3'UTR//CDS//exon       24981863
chr14:75602565-75602566(-) m6A 3'UTR//CDS//exon       24981863
chr14:75605784-75605785(-) m6A 3'UTR//intron       24981863
chr14:75614403-75614404(-) m6A CDS//exon       24981863//27773535
chr14:75614437-75614438(-) m6A CDS//exon       24981863//27773535
chr14:75643308-75643309(-) Y 5'UTR//exon       26075521

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate TMED10
Chromatin K562 cells     -
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleoplasm K562 cells     -
Ribosome HEK-293 cells     22199352
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART20-5p
Interactor2: TMED10

Evidence Support:


Prediction-Evidence cRep//miRanda//Targetscan
Support Database RepTar//VmiReg

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