Detail Information

Basic Information:


  VIRBase ID:  

VHID00385288

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART20-5p:           SPON2:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART20-5p SPON2
miRBase
Accession/Entrez ID		 MIMAT0003719 10417
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - DIL-1//DIL1//M-SPONDIN//MINDIN

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SPON2
chr4:1178532(-) A-I      intronic
chr4:1178529(-) A-I      intronic
chr4:1178479(-) A-I      intronic
chr4:1178478(-) A-I      intronic
chr4:1178466(-) A-I      intronic
chr4:1178460(-) A-I      intronic
chr4:1178052(-) A-I      intronic
chr4:1178024(-) A-I      intronic
chr4:1178011(-) A-I      intronic
chr4:1177893(-) A-I      intronic
chr4:1177872(-) A-I      intronic
chr4:1167788(-) A-I      intronic
chr4:1179420(-) A-I      intronic
chr4:1179413(-) A-I      intronic
chr4:1178597(-) A-I      intronic
chr4:1180243(-) A-I      intronic
chr4:1180240(-) A-I      intronic
chr4:1180230(-) A-I      intronic
chr4:1179037(-) A-I      intronic
chr4:1178974(-) A-I      intronic
chr4:1179433(-) A-I      intronic
chr4:1176917(-) A-I      intronic
chr4:1178938(-) A-I      intronic
chr4:1178914(-) A-I      intronic
chr4:1178991(-) A-I      intronic
chr4:1176905(-) A-I      intronic
chr4:1177974(-) A-I      intronic
chr4:1179043(-) A-I      intronic
chr4:1179057(-) A-I      intronic
chr4:1179131(-) A-I      intronic
chr4:1179332(-) A-I      intronic
chr4:1180291(-) A-I      intronic
chr4:1179333(-) A-I      intronic
chr4:1180270(-) A-I      intronic
chr4:1179374(-) A-I      intronic
chr4:1180269(-) A-I      intronic
chr4:1180266(-) A-I      intronic
chr4:1178900(-) A-I      intronic
chr4:1178698(-) A-I      intronic
chr4:1178663(-) A-I      intronic
chr4:1178643(-) A-I      intronic
chr4:1179387(-) A-I      intronic
chr4:1180260(-) A-I      intronic
chr4:1179388(-) A-I      intronic
chr4:1180256(-) A-I      intronic
chr4:1178616(-) A-I      intronic
chr4:1179372(-) A-I      intronic
chr4:1178668(-) A-I      intronic
chr4:1167918(-) A-I      intronic
chr4:1178954(-) A-I      intronic
chr4:1179059(-) A-I      intronic
chr4:1177913(-) A-I      intronic
chr4:1179136(-) A-I      intronic
chr4:1167822(-) A-I      intronic
chr4:1177868(-) A-I      intronic
chr4:1195495(-) A-I      intronic
chr4:1178488(-) A-I      intronic
chr4:1167785(-) A-I      intronic
chr4:1178541(-) A-I      intronic
chr4:1180364(-) A-I      intronic
chr4:1176946(-) A-I      intronic
chr4:1177871(-) A-I      intronic
chr4:1178538(-) A-I      intronic
chr4:1178557(-) A-I      intronic
chr4:1176837(-) A-I      intronic
chr4:1176907(-) A-I      intronic
chr4:1195555(-) A-I      intronic
chr4:1197887(-) A-I      intronic
chr4:1179330(-) A-I      intronic
chr4:1177903(-) A-I      intronic
chr4:1178554(-) A-I      intronic
chr4:1195552(-) A-I      intronic
chr4:1178996(-) A-I      intronic
chr4:1179091(-) A-I      intronic
chr4:1167732(-) A-I      intronic
chr4:1179092(-) A-I      intronic
chr4:1180229(-) A-I      intronic
chr4:1180371(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED SPON2
chr4:1176907(-) A-I intron -    22327324
chr4:1176946(-) A-I intron -    22327324
chr4:1177868(-) A-I intron -    22327324
chr4:1178488(-) A-I intron -    22327324
chr4:1178541(-) A-I intron -    22327324
chr4:1178557(-) A-I intron -    22327324
chr4:1178662(-) A-I intron -    22327324
chr4:1167822(-) A-G intron -    22484847
chr4:1167918(-) A-G intron -    22484847
chr4:1168291(-) G-T intron -    22484847
chr4:1176837(-) A-G intron -    22484847
chr4:1176907(-) A-G intron -    22484847
chr4:1176908(-) T-C intron -    22484847
chr4:1176909(-) T-C intron -    22484847
chr4:1176922(-) T-C intron -    22484847
chr4:1176946(-) A-G intron -    22484847
chr4:1177028(-) G-T intron -    22484847
chr4:1177868(-) A-G intron -    22484847
chr4:1177871(-) A-G intron -    22484847
chr4:1177973(-) A-G intron -    22484847
chr4:1178541(-) A-G intron -    22484847
chr4:1178557(-) A-G intron -    22484847
chr4:1178625(-) A-G intron -    22484847
chr4:1178642(-) A-G intron -    22484847
chr4:1178954(-) A-G intron -    22484847
chr4:1179060(-) A-G intron -    22484847
chr4:1179091(-) A-G intron -    22484847
chr4:1179092(-) A-G intron -    22484847
chr4:1179106(-) A-G intron -    22484847
chr4:1179136(-) A-G intron -    22484847
chr4:1179137(-) A-G intron -    22484847
chr4:1179330(-) A-G intron -    22484847
chr4:1179339(-) A-G intron -    22484847
chr4:1179444(-) A-G intron -    22484847
chr4:1180371(-) A-G intron -    22484847
chr4:1182015(-) C-T intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SPON2
chr4:1160739-1160740(-) m6A 3'UTR       24284625
chr4:1160877-1160878(-) m6A 3'UTR       24284625
chr4:1161076-1161077(-) m6A 3'UTR       24284625//25456834
chr4:1161257-1161258(-) m6A 3'UTR       24284625//27371828
chr4:1161351-1161352(-) m6A CDS       24284625//25456834//27371828
chr4:1161363-1161364(-) m6A CDS       24284625//25456834//27371828
chr4:1161394-1161395(-) m6A CDS       24284625//25456834//27371828
chr4:1161425-1161426(-) m6A CDS       24284625//25456834//27371828
chr4:1163695-1163696(-) m6A exon//intron       24284625
chr4:1163910-1163911(-) m6A exon//intron       27773535//27371828
chr4:1163925-1163926(-) m6A exon//intron       27773535//27371828
chr4:1163939-1163940(-) m6A exon//intron       24284625//27773535//27371828
chr4:1164116-1164117(-) m6A exon//intron       27773535
chr4:1164122-1164123(-) m6A exon//intron       27773535
chr4:1164146-1164147(-) m6A exon//intron       24284625//27773535
chr4:1164163-1164164(-) m6A exon//intron       24284625//27773535
chr4:1164181-1164182(-) m6A exon//intron       24284625//27773535
chr4:1164200-1164201(-) m6A CDS//exon       24284625//27773535
chr4:1164215-1164216(-) m6A CDS//exon       24284625//27773535
chr4:1164799-1164800(-) m6A CDS//exon       24284625//27773535
chr4:1164847-1164848(-) m6A CDS//exon       24284625//27773535
chr4:1164874-1164875(-) m6A CDS//exon       24284625//27773535
chr4:1164888-1164889(-) m6A CDS//exon       24284625//27773535
chr4:1164901-1164902(-) m6A CDS//exon       24284625
chr4:1164916-1164917(-) m6A CDS//exon       24284625
chr4:1164925-1164926(-) m6A CDS//exon       24284625
chr4:1165234-1165235(-) m6A CDS//exon       24284625
chr4:1165525-1165526(-) m6A exon//intron       24284625
chr4:1165851-1165852(-) m6A CDS//exon       24284625
chr4:1166440-1166441(-) m6A 5'UTR//exon       -
chr4:1166449-1166450(-) m6A 5'UTR//exon       -
chr4:1166626-1166627(-) m6A 5'UTR//exon//intron       -
chr4:1166634-1166635(-) m6A 5'UTR//intron       -
chr4:1175215-1175216(-) Tm intron       -
chr4:1188791-1188792(-) m6A 5'UTR//intron       24284625
chr4:1190758-1190759(-) m6A exon//intron       24284625
chr4:1190815-1190816(-) m6A exon//intron       24284625
chr4:1190899-1190900(-) m6A exon//intron       24284625
chr4:1193749-1193750(-) m6A exon//intron       27371828
chr4:1193789-1193790(-) m6A exon//intron       27371828
chr4:1195068-1195069(-) m6A 5'UTR//exon//intron       24284625//27371828
chr4:1195081-1195082(-) m6A 5'UTR//exon//intron       24284625//27371828
chr4:1195145-1195146(-) m6A 5'UTR//exon//intron       24284625//27371828
chr4:1195186-1195187(-) m6A 5'UTR//exon//intron       24284625//27371828
chr4:1198786-1198787(-) m6A 5'UTR//exon//intron       24284625//27371828
chr4:1198795-1198796(-) m6A 5'UTR//exon//intron       24284625//27371828

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate SPON2
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Nucleus HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART20-5p
Interactor2: SPON2

Evidence Support:


Prediction-Evidence miRanda//PITA//Targetscan
Support Database VmiReg

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