Basic Information:

  VIRBase ID:  

VHID00385285

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART20-5p:  MIMAT0003719          RACK1:  NM_006098     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART20-5p	RACK1
miRBase Accession/Entrez ID	MIMAT0003719	10399
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	Gnb2-rs1//GNB2L1//H12.3//HLC-7//PIG21

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	RACK1	chr5:180667784(-) A-I      intronic chr5:180669832(-) A-I      intronic chr5:180669779(-) A-I      intronic chr5:180669815(-) A-I      intronic chr5:180667722(-) A-I      intronic chr5:180669620(-) A-I      intronic chr5:180669634(-) A-I      intronic chr5:180669664(-) A-I      intronic chr5:180669715(-) A-I      intronic chr5:180669736(-) A-I      intronic chr5:180669763(-) A-I      intronic chr5:180667957(-) A-I      ncRNA chr5:180669695(-) A-I      intronic chr5:180667912(-) A-I      intronic chr5:180667894(-) A-I      intronic chr5:180667778(-) A-I      intronic chr5:180669834(-) A-I      intronic chr5:180667800(-) A-I      intronic chr5:180669666(-) A-I      intronic chr5:180667733(-) A-I      intronic chr5:180667404(-) A-I      intronic chr5:180669786(-) A-I      intronic chr5:180669772(-) A-I      intronic chr5:180667966(-) A-I      ncRNA chr5:180667961(-) A-I      ncRNA chr5:180668002(-) A-I      ncRNA chr5:180668041(-) A-I      ncRNA

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	RACK1	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     - Exosome Blood     - Membrane K562 cells     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HeLa-S3 cells|K562 cells     - Ribosome HEK-293 cells     22199352 Ribosome-free cytosol Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART20-5p
Interactor2: RACK1

Evidence Support:

Prediction-Evidence	miRanda//RNAHybrid
Support Database	VmiReg