Basic Information:

  VIRBase ID:  

VHID00385066

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART20-5p:  MIMAT0003719          SLC4A8:  NR_047672     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART20-5p	SLC4A8
miRBase Accession/Entrez ID	MIMAT0003719	9498
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	NBC3//NDCBE

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SLC4A8	chr12:51885403(+) A-I      intronic chr12:51885397(+) A-I      intronic chr12:51891662(+) A-I      intronic chr12:51891661(+) A-I      intronic chr12:51885415(+) A-I      intronic chr12:51885420(+) A-I      intronic chr12:51885537(+) A-I      intronic chr12:51885432(+) A-I      intronic chr12:51891667(+) A-I      intronic chr12:51892920(+) A-I      intronic chr12:51891790(+) A-I      intronic chr12:51885555(+) A-I      intronic chr12:51891787(+) A-I      intronic chr12:51873306(+) A-I      intronic chr12:51891780(+) A-I      intronic chr12:51885412(+) A-I      intronic chr12:51885559(+) A-I      intronic chr12:51843069(+) A-I      intronic chr12:51885577(+) A-I      intronic chr12:51843043(+) A-I      intronic chr12:51885407(+) A-I      intronic chr12:51885448(+) A-I      intronic chr12:51885447(+) A-I      intronic chr12:51891666(+) A-I      intronic chr12:51873287(+) A-I      intronic chr12:51843758(+) A-I      intronic chr12:51873295(+) A-I      intronic chr12:51885431(+) A-I      intronic chr12:51885429(+) A-I      intronic chr12:51885428(+) A-I      intronic chr12:51885423(+) A-I      intronic chr12:51843757(+) A-I      intronic chr12:51843164(+) A-I      intronic chr12:51892949(+) A-I      intronic chr12:51875489(+) A-I      intronic chr12:51875477(+) A-I      intronic chr12:51870922(+) A-I      intronic chr12:51843118(+) A-I      intronic chr12:51870917(+) A-I      intronic chr12:51843124(+) A-I      intronic chr12:51843688(+) A-I      intronic chr12:51870100(+) A-I      intronic chr12:51892803(+) A-I      intronic chr12:51892621(+) A-I      intronic chr12:51892515(+) A-I      intronic chr12:51876325(+) A-I      intronic chr12:51870145(+) A-I      intronic chr12:51870916(+) A-I      intronic chr12:51830504(+) A-I      intronic chr12:51830511(+) A-I      intronic chr12:51830540(+) A-I      intronic chr12:51892818(+) A-I      intronic chr12:51841086(+) A-I      intronic chr12:51826386(+) A-I      intronic chr12:51843091(+) A-I      intronic chr12:51891760(+) A-I      intronic chr12:51840994(+) A-I      intronic chr12:51843698(+) A-I      intronic chr12:51892509(+) A-I      intronic chr12:51892785(+) A-I      intronic chr12:51892947(+) A-I      intronic chr12:51843666(+) A-I      intronic chr12:51892966(+) A-I      intronic chr12:51892729(+) A-I      intronic chr12:51843626(+) A-I      intronic chr12:51843130(+) A-I      intronic chr12:51873300(+) A-I      intronic chr12:51843797(+) A-I      intronic chr12:51891755(+) A-I      intronic chr12:51842960(+) A-I      intronic chr12:51826428(+) A-I      intronic chr12:51843022(+) A-I      intronic chr12:51891716(+) A-I      intronic chr12:51891724(+) A-I      intronic chr12:51834124(+) A-I      intronic chr12:51891749(+) A-I      intronic chr12:51897269(+) A-I      intronic chr12:51870791(+) A-I      intronic chr12:51871806(+) A-I      intronic chr12:51892845(+) A-I      intronic chr12:51891776(+) A-I      intronic chr12:51891621(+) A-I      3'UTR chr12:51891557(+) A-I      3'UTR chr12:51891562(+) A-I      3'UTR chr12:51891534(+) A-I      3'UTR chr12:51892512(+) A-I      intronic chr12:51876399(+) A-I      intronic chr12:51843752(+) A-I      intronic chr12:51843148(+) A-I      intronic chr12:51826427(+) A-I      intronic chr12:51841000(+) A-I      intronic chr12:51826410(+) A-I      intronic chr12:51892823(+) A-I      intronic chr12:51894588(+) A-I      intronic chr12:51892489(+) A-I      intronic chr12:51892743(+) A-I      intronic chr12:51843702(+) A-I      intronic chr12:51843570(+) A-I      intronic chr12:51827801(+) A-I      intronic chr12:51892545(+) A-I      intronic chr12:51870756(+) A-I      intronic chr12:51827849(+) A-I      intronic chr12:51875589(+) A-I      intronic chr12:51841066(+) A-I      intronic chr12:51841710(+) A-I      intronic chr12:51873213(+) A-I      intronic chr12:51843093(+) A-I      intronic chr12:51892514(+) A-I      intronic chr12:51827881(+) A-I      intronic chr12:51840971(+) A-I      intronic chr12:51843684(+) A-I      intronic chr12:51894795(+) A-I      intronic chr12:51870868(+) A-I      intronic chr12:51892646(+) A-I      intronic chr12:51840993(+) A-I      intronic chr12:51875639(+) A-I      intronic chr12:51843549(+) A-I      intronic chr12:51826316(+) A-I      intronic chr12:51892455(+) A-I      intronic chr12:51892842(+) A-I      intronic chr12:51870792(+) A-I      intronic chr12:51891710(+) A-I      intronic chr12:51843653(+) A-I      intronic chr12:51829332(+) A-I      intronic chr12:51892950(+) A-I      intronic chr12:51843172(+) A-I      intronic chr12:51886294(+) A-I      intronic chr12:51885394(+) A-I      intronic chr12:51885369(+) A-I      intronic chr12:51827798(+) A-I      intronic chr12:51894820(+) A-I      intronic chr12:51870821(+) A-I      intronic chr12:51843722(+) A-I      intronic chr12:51826342(+) A-I      intronic chr12:51885471(+) A-I      intronic chr12:51892915(+) A-I      intronic chr12:51827736(+) A-I      intronic chr12:51885400(+) A-I      intronic chr12:51885466(+) A-I      intronic chr12:51834079(+) A-I      intronic chr12:51875646(+) A-I      intronic chr12:51885578(+) A-I      intronic chr12:51843627(+) A-I      intronic chr12:51871705(+) A-I      intronic chr12:51892811(+) A-I      intronic chr12:51892584(+) A-I      intronic chr12:51841112(+) A-I      intronic chr12:51887303(+) A-I      intronic chr12:51876216(+) A-I      intronic chr12:51841014(+) A-I      intronic chr12:51896195(+) A-I      intronic chr12:51870855(+) A-I      intronic chr12:51870753(+) A-I      intronic chr12:51887086(+) A-I      intronic chr12:51826488(+) A-I      intronic chr12:51887266(+) A-I      intronic chr12:51843569(+) A-I      intronic chr12:51891720(+) A-I      intronic chr12:51891833(+) A-I      intronic chr12:51892910(+) A-I      intronic chr12:51843075(+) A-I      intronic chr12:51827738(+) A-I      intronic chr12:51841024(+) A-I      intronic chr12:51843768(+) A-I      intronic chr12:51843547(+) A-I      intronic chr12:51843226(+) A-I      intronic chr12:51887019(+) A-I      intronic chr12:51843715(+) A-I      intronic chr12:51885634(+) A-I      intronic chr12:51885470(+) A-I      intronic chr12:51887091(+) A-I      intronic chr12:51842967(+) A-I      intronic chr12:51840898(+) A-I      intronic chr12:51830430(+) A-I      intronic chr12:51891769(+) A-I      intronic chr12:51826507(+) A-I      intronic chr12:51892648(+) A-I      intronic chr12:51892542(+) A-I      intronic chr12:51826413(+) A-I      intronic chr12:51885590(+) A-I      intronic chr12:51887018(+) A-I      intronic chr12:51896256(+) A-I      intronic chr12:51842966(+) A-I      intronic chr12:51843138(+) A-I      intronic chr12:51891810(+) A-I      intronic chr12:51892619(+) A-I      intronic chr12:51896429(+) A-I      intronic chr12:51892407(+) A-I      intronic chr12:51896464(+) A-I      intronic chr12:51891630(+) A-I      3'UTR chr12:51891604(+) A-I      3'UTR chr12:51891540(+) A-I      3'UTR chr12:51891602(+) A-I      3'UTR chr12:51891580(+) A-I      3'UTR chr12:51891631(+) A-I      3'UTR chr12:51891541(+) A-I      3'UTR

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	SLC4A8	chr12:51891534(+) A-I exon 3'UTR    15342557   //21960545 chr12:51891541(+) A-I exon 3'UTR    15342557   //21960545 chr12:51891604(+) A-I exon 3'UTR    15342557 chr12:51891621(+) A-I exon 3'UTR    15342557   //21960545 chr12:51891630(+) A-I exon 3'UTR    15342557 chr12:51903940(+) A-I intron -    21960545 chr12:51907302(+) A-I intron -    21960545 chr12:51907308(+) A-I intron -    21960545 chr12:51786963(+) A-I intron -    21960545 chr12:51786973(+) A-I intron -    21960545 chr12:51787062(+) A-I intron -    21960545 chr12:51787064(+) A-I intron -    21960545 chr12:51787153(+) A-I intron -    21960545 chr12:51788666(+) A-I intron -    21960545 chr12:51788776(+) A-I intron -    21960545 chr12:51790456(+) A-I intron -    21960545 chr12:51791587(+) A-I intron -    21960545 chr12:51791669(+) A-I intron -    21960545 chr12:51795690(+) A-I intron -    21960545 chr12:51799402(+) A-I intron -    21960545 chr12:51800937(+) A-I intron -    21960545 chr12:51801062(+) A-I intron -    21960545 chr12:51801106(+) A-I intron -    21960545 chr12:51802872(+) A-I intron -    21960545 chr12:51802873(+) A-I intron -    21960545 chr12:51802935(+) A-I intron -    21960545 chr12:51802938(+) A-I intron -    21960545 chr12:51803338(+) A-I intron -    21960545 chr12:51804371(+) A-I intron -    21960545 chr12:51804381(+) A-I intron -    21960545 chr12:51805133(+) A-I intron -    21960545 chr12:51805181(+) A-I intron -    21960545 chr12:51805627(+) A-I intron -    21960545 chr12:51810306(+) A-I intron -    21960545 chr12:51810307(+) A-I intron -    21960545 chr12:51810676(+) A-I intron -    21960545 chr12:51810790(+) A-I intron -    21960545 chr12:51816406(+) A-I intron -    21960545 chr12:51827887(+) A-I intron -    21960545 chr12:51827894(+) A-I intron -    21960545 chr12:51830540(+) A-I intron -    21960545 chr12:51834078(+) A-I intron -    21960545 chr12:51834148(+) A-I intron -    21960545 chr12:51840898(+) A-I intron -    21960545 chr12:51840946(+) A-I intron -    21960545 chr12:51840971(+) A-I intron -    21960545 chr12:51841066(+) A-I intron -    21960545 chr12:51841111(+) A-I intron -    21960545 chr12:51843547(+) A-I intron -    21960545 chr12:51843626(+) A-I intron -    21960545 chr12:51843635(+) A-I intron -    21960545 chr12:51843661(+) A-I intron -    21960545 chr12:51843666(+) A-I intron -    21960545 chr12:51843768(+) A-I intron -    21960545 chr12:51873854(+) A-I intron -    21960545 chr12:51873905(+) A-I intron -    21960545 chr12:51873908(+) A-I intron -    21960545 chr12:51876325(+) A-I intron -    21960545 chr12:51885397(+) A-I intron -    21960545 chr12:51885448(+) A-I intron -    21960545 chr12:51885470(+) A-I intron -    21960545 chr12:51885471(+) A-I intron -    21960545 chr12:51885578(+) A-I intron -    21960545 chr12:51885590(+) A-I intron -    21960545 chr12:51885634(+) A-I intron -    21960545 chr12:51887018(+) A-I intron -    21960545 chr12:51887019(+) A-I intron -    21960545 chr12:51887124(+) A-I intron -    21960545 chr12:51887126(+) A-I intron -    21960545 chr12:51887303(+) A-I intron -    21960545 chr12:51891586(+) A-I intron -    21960545 chr12:51891716(+) A-I intron -    21960545 chr12:51891720(+) A-I intron -    21960545 chr12:51891724(+) A-I intron -    21960545 chr12:51892818(+) A-I intron -    21960545 chr12:51892953(+) A-I intron -    21960545 chr12:51907431(+) A-G intron -    21725310 chr12:51788776(+) A-G intron -    22484847 chr12:51801112(+) A-G intron -    22484847 chr12:51801145(+) C-T intron -    22484847 chr12:51810342(+) A-G intron -    22484847 chr12:51826342(+) A-G intron -    22484847 chr12:51907378(+) A-G intron -    22484847 chr12:51786998(+) A-G intron -    22484847 chr12:51786999(+) A-G intron -    22484847 chr12:51795787(+) A-G intron -    22484847 chr12:51796237(+) A-G intron -    22484847 chr12:51796369(+) A-G intron -    22484847 chr12:51796385(+) A-G intron -    22484847 chr12:51801179(+) A-G intron -    22484847 chr12:51810244(+) A-G intron -    22484847 chr12:51810251(+) A-G intron -    22484847 chr12:51810758(+) A-G intron -    22484847 chr12:51811616(+) A-G intron -    22484847 chr12:51829332(+) A-G intron -    22484847 chr12:51830430(+) A-G intron -    22484847 chr12:51839099(+) T-C intron -    22484847 chr12:51839102(+) A-G intron -    22484847 chr12:51840971(+) A-G intron -    22484847 chr12:51841000(+) A-G intron -    22484847 chr12:51841014(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SLC4A8	chr12:51785693-51785694(+) m6A exon//intron       25456834 chr12:51785731-51785732(+) m6A exon//intron       25456834 chr12:51901626-51901627(+) m6A 3'UTR//exon       25456834//24981863 chr12:51901649-51901650(+) m6A 3'UTR//exon       25456834//24981863 chr12:51901658-51901659(+) m6A 3'UTR//exon       25456834//24981863 chr12:51902076-51902077(+) m6A 3'UTR//exon       - chr12:51902194-51902195(+) m6A 3'UTR//exon       24981863//22608085 chr12:51902314-51902315(+) m6A 3'UTR//exon       24209618//24981863 chr12:51902374-51902375(+) m6A 3'UTR//exon       25456834//24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SLC4A8	Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART20-5p
Interactor2: SLC4A8

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg