Basic Information:

  VIRBase ID:  

VHID00385041

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART20-5p:  MIMAT0003719          LIPG:  NM_001308006     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART20-5p	LIPG
miRBase Accession/Entrez ID	MIMAT0003719	9388
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	EDL//EL//PRO719

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	LIPG	chr18:47113554(+) A-I      intronic chr18:47116014(+) A-I      intronic chr18:47113555(+) A-I      intronic chr18:47116024(+) A-I      intronic chr18:47116033(+) A-I      intronic chr18:47113565(+) A-I      intronic chr18:47107428(+) A-I      intronic chr18:47114677(+) A-I      intronic chr18:47114805(+) A-I      intronic chr18:47114905(+) A-I      intronic chr18:47115885(+) A-I      intronic chr18:47115945(+) A-I      intronic chr18:47113550(+) A-I      intronic chr18:47113845(+) A-I      intronic chr18:47113652(+) A-I      intronic chr18:47113457(+) A-I      intronic chr18:47107550(+) A-I      intronic chr18:47114420(+) A-I      intronic chr18:47114771(+) A-I      intronic chr18:47113729(+) A-I      intronic chr18:47113871(+) A-I      intronic chr18:47114237(+) A-I      intronic chr18:47107545(+) A-I      intronic chr18:47107482(+) A-I      intronic chr18:47114782(+) A-I      intronic chr18:47106418(+) A-I      intronic chr18:47106393(+) A-I      intronic chr18:47113384(+) A-I      intronic chr18:47113410(+) A-I      intronic chr18:47114930(+) A-I      intronic chr18:47116059(+) A-I      intronic chr18:47113376(+) A-I      intronic chr18:47114360(+) A-I      intronic chr18:47107427(+) A-I      intronic chr18:47102348(+) A-I      intronic chr18:47106405(+) A-I      intronic chr18:47107559(+) A-I      intronic chr18:47113667(+) A-I      intronic chr18:47114434(+) A-I      intronic chr18:47115932(+) A-I      intronic chr18:47114833(+) A-I      intronic chr18:47107387(+) A-I      intronic chr18:47106264(+) A-I      intronic chr18:47114880(+) A-I      intronic chr18:47114730(+) A-I      intronic chr18:47113685(+) A-I      intronic chr18:47114795(+) A-I      intronic chr18:47114286(+) A-I      intronic chr18:47115853(+) A-I      intronic chr18:47113570(+) A-I      intronic chr18:47115855(+) A-I      intronic chr18:47106367(+) A-I      intronic chr18:47113818(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	LIPG	chr18:47087396-47087397(+) m6A 5'UTR       25456834 chr18:47087441-47087442(+) m6A 5'UTR       25456834 chr18:47087487-47087488(+) m6A 5'UTR       25456834 chr18:47087544-47087545(+) m6A 5'UTR       25456834 chr18:47087571-47087572(+) m6A 5'UTR       25456834 chr18:47087694-47087695(+) m6A 5'UTR       25456834 chr18:47116971-47116972(+) m6A 3'UTR//exon       25456834 chr18:47117021-47117022(+) m6A 3'UTR//exon       25456834//24981863 chr18:47117047-47117048(+) m6A 3'UTR//exon       25456834//24981863 chr18:47117064-47117065(+) m6A 3'UTR//exon       25456834//24981863 chr18:47117114-47117115(+) m6A 3'UTR//exon       25456834//24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	LIPG	Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleus Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART20-5p
Interactor2: LIPG

Evidence Support:

Prediction-Evidence	cRep//miRanda//Targetscan
Support Database	RepTar//VmiReg